Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00485 ATTCCGGCGATGGAAACTCCGCAAGCTGGATCCGAGAAGGACAAAGCAGCCAATTCTTTGTCCTCATCATCTTCTCCGGTATCGGTTGTCTCCAACTTCTGGAAAGATTTTGATTTAGAGAAAGAGAAAGGAGTGTTGGATGAGCAAGGTCTTCGGATAGCTGAAAACCAAGAAAATAGCTTGAAAAATAGACGAAAGCTTGCAGAAAGTACAAGAGATTTCAGGAAAGCTTCGCCAGAGGAGAAGTTAAATTTATTTAATTCTCTTCTTAAATGTTACCAAGAAGAAGTTGATAACATTACCAAGCGAGCGAAGTTTGGAGAAAATGCTTTCCTTAACATCTATCAAAAACTTTATGAGGCTCCAGATCCTTATCCCGCTATTGCTTCAATTTCTGAGCAAGAGGCTAAATTATCTGACATGGAGTCTGAAAATCGGAAAATGAAAGTTGAGCTTGAGGAATTTAGAACAGAATCTTCTCATCTAAAAAATCAGCAGGCAACAATAAGGAGACTTGAAGAACGCAATCGACAATTGGAGCAACAGATGGAAGAAAAAATCAAAGAGATAGTGGAGATCAGGCAACGCAGTTTGGCAGAAGAGAATCAGAAAACATTTGATGTTTTGAAAGAAAGGGAGCAATTGCTACAGGATCAATTAAGACAAGCTAAAGAAAGTGTCTCAAACATGCAAAAGATACATGAACTTGCTCAAAGTCAATTATTTGAACTTCGGGCTCAGTCAGACGAAGAGAGGGCAGCTAAACAATCAGAGGTCAATCTTCTGATGGATGAAGTTGAGCGGGCTCAAACAAGGCTTCTAAGCCTTGAAAGGGAGAAGGGACTTCTGCGTTCTCAGTTACAATCTGCTAATGAAGATGGTGGAAATAAGAAAAGAATCTTTAATATCTTGGAAGTAATGTCTATTATGGCATTAATGTTCGCCAGTTCTTTTTTCTTCTGGGCTTATCTTTGTAACTTGTCAATGACTTTTTCTTCTCTCGAGAACTCTCTGAGTGCCAAAGAGAAGATTATCTCTGAATTAAACATGGAACTTCACAGCATTGAGACAACCTTGTCAAGTGAAAGGGAGCAACACATAAATGAAATCAAGATATTGAATGGAATTATAAATGAAAAGGAAACTGCTCTTGATGAAATGAAGAAAGAGCTTCAAGGCAGGCCAACATCAAAATTGGTCGATGACTTGAGAAAAAAAGTTAAAATTTTGCAGGCTGTGGGTTATAATTCGATTGAGGCTGAAGATTGGGAAGCAGCTACTAGTGCTGAAGAGATGAGCAAAATGGAGTCTCTTCTTCTTGATAAAAATAGAAAAATGGAACATGAACTTACACAATTGAAGGTTAAACTTTCTGAAAAAGCATCTTTGCTGGAAACAGCTGAAACCAAGATTTCTGAACTCTCAGAGAAGGTTGCTGAACAACAGAAGTTAATACAGAAGTTGGAAGATGATATACTAAAGGGTTATAGCTCCAAAGATCAAAAAGGCACTCTCTTTGATGACTGGAATCTTTCTGAAGTCAGGGGGGTGGACCTGCCTGAGAATGCAGATAGAAAAAATCCGTCTACAGATCAAGATCAAAGTTCAATGCTTAAGGTAGAAATAAGGCAACTGAAAGAGAAGATAGGGCATCTAACTGTGGAATTGGAAAGGACGAAAGCAGATAATGTCAAACTTTATGGAAAGATTCGTTATGTCCAGGACTATAATCTTGAGAAAGTAGTTTCCAGAGGATCAAAGAAGCATGCAGAAGATCTTGAAAGTGGTTTTTCATCAGATGTTGAATCCAAGTATAAAAAAATATATGAAGAAGATATTAATCCTTTCGCTGCATTTTCGAAAAGGGAAAGGGATCAAAGATACAAGGAGTTGGGTATCAGGGATAAAATCACGCTCAGTAGTGGACGATTTCTCTTGGGAAACAAATATGCTCGAACATTTGCATTTTTCTACACTATCGGATTGCATGTCTTAGTGTTCACCTGCCTATATCGAATGTCGGCTCTGAGCCATCTTAGGTAA 2043 38.28 IPAMETPQAGSEKDKAANSLSSSSSPVSVVSNFWKDFDLEKEKGVLDEQGLRIAENQENSLKNRRKLAESTRDFRKASPEEKLNLFNSLLKCYQEEVDNITKRAKFGENAFLNIYQKLYEAPDPYPAIASISEQEAKLSDMESENRKMKVELEEFRTESSHLKNQQATIRRLEERNRQLEQQMEEKIKEIVEIRQRSLAEENQKTFDVLKEREQLLQDQLRQAKESVSNMQKIHELAQSQLFELRAQSDEERAAKQSEVNLLMDEVERAQTRLLSLEREKGLLRSQLQSANEDGGNKKRIFNILEVMSIMALMFASSFFFWAYLCNLSMTFSSLENSLSAKEKIISELNMELHSIETTLSSEREQHINEIKILNGIINEKETALDEMKKELQGRPTSKLVDDLRKKVKILQAVGYNSIEAEDWEAATSAEEMSKMESLLLDKNRKMEHELTQLKVKLSEKASLLETAETKISELSEKVAEQQKLIQKLEDDILKGYSSKDQKGTLFDDWNLSEVRGVDLPENADRKNPSTDQDQSSMLKVEIRQLKEKIGHLTVELERTKADNVKLYGKIRYVQDYNLEKVVSRGSKKHAEDLESGFSSDVESKYKKIYEEDINPFAAFSKRERDQRYKELGIRDKITLSSGRFLLGNKYARTFAFFYTIGLHVLVFTCLYRMSALSHLR 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6869361 6878224 + Bda023730.1 Bda06g00485 8067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00485 680 MobiDBLite consensus disorder prediction 517 537 - -
Bda06g00485 680 Coils Coil 252 293 - -
Bda06g00485 680 MobiDBLite consensus disorder prediction 12 28 - -
Bda06g00485 680 Coils Coil 131 196 - -
Bda06g00485 680 Pfam CASP C terminal 538 676 IPR012955 GO:0006891|GO:0030173
Bda06g00485 680 Coils Coil 457 491 - -
Bda06g00485 680 MobiDBLite consensus disorder prediction 1 28 - -
Bda06g00485 680 Coils Coil 370 390 - -
Bda06g00485 680 PANTHER CCAAT DISPLACEMENT PROTEIN-RELATED 26 678 - -
Bda06g00485 680 Coils Coil 206 233 - -
Bda06g00485 680 Coils Coil 51 71 - -
Bda06g00485 680 Coils Coil 345 365 - -
Bda06g00485 680 PANTHER HOMEOBOX PROTEIN CUT 26 678 - -
Bda06g00485 680 Coils Coil 542 562 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00485 K09313 CUTL; homeobox protein cut-like - csv:101221135 1026.54
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g346 . . Bda06g00485 . . . . Bma12g00932 . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0272 . . . . . . . . . . Bpe07g00725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011821 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00485 Bda_Chr06 FPKM 6.483991 7.058191 0.755178 1.030361 13.979939 14.592756 15.743544 0.0 0.0