Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00486 ATGAAGTTTGGAAGTTATGATCTGTTTTCTACTCGCATTTGTCAAATTTATTTCGATGATTTTTTTTTGTTTGGTTATTCAGATGAAGTTTCGGCCATTGTCATTGACCTTGGTTCGCACACTTGTAAAGCTGGTTATGCTGGGGAAGATGCTCCCAAGGCTGTGTTTCCCTCCGTTGTCGGCTCAATTGACCAAATGGAAGTTGACGACCCCGTGAACACTGACAAAAACTCTGTATCGGCAGTTGATTCTAAAATTAGTAAAAATATCGATACAGAAAAACTGAAGGGTAAACGTAAATTATATGTTGGGTCTCAAGCATTAGGATTCCGACGCGATTACATGGAGGTAGTGGTAGCTCCTATAAAAGATGGTGTTATTGTCGACTGGGATATGGTTGATAGCATATGGGATCATGCCTTCAGGGAATGCCTTCTGGTTGATCCTAAAGAGCACCCAATGCTACTTGCGGAACCATCTTTTAACTCACAACAGCAGAGAGAAAGGACAGCAGAACTTATGTTTGAAAAATACAATGTTCCTGCATTATTTCTTGCAAAAAATGCAGTTCTCACATCTTTTGCTTCTGGGCGTGCTACCTCCTTAGTTGTTGATAGTGGTGGAGGATCGACTACAGTTGCTCCAGTTCATGATGGTTATGTTCTTCAAAAGGCTGTGTCATCTTCTCCTATTGGAGGTGAAGTTCTAACTGATTGCTTGGTAAAAAGTTTGGAGAGCAAAGGTATCGTGATAAAGCCCAGGTACTCATTCAAAAGAAAGGAAATACGTCCAGGAGACTTTCAGGCAGTGGATCTTGATTTTCCAAATACTACAGAAAGTTATAGACTTTACTCCCAGAGGGTAATTGCCAGTGATATCAAGGAATGTGTCTGTCGGGCCCCAGATTCTCCATACGATGAGAGTGCATATTCAAACATTCCAATGACCCCTTACGAACTTCCTGACGGCCAGACTATTGAAATTGGTGCGGATAGATTCAAGATCCCTGATATTCTTTTTAATCCATCCCTTGTACAGCAGACAATTCCTGGTATGGAGACTTTTGCTGAGACTGCATCTATGGTTCGAGGGCTGCCACAAATGGTTATAGAAAGCATAAACAAGTGTGATGTGGACATTCGAAGAGAACTTTTCAGTAGTATACTGCTTGCTGGTGGGACAGCATCAATGCAGCAGTTGAAGGAGCGTCTTGAGAAAGACTTGTTAGAGGAGTCTCCCCAAGCTGCTCGTGTTAAAGTTTTAGCAAGTGGAAATGCAACGGAAAGAAGATTTAGTGTCTGGATTGGAGGTAGCATATTGGCTTCCCTTGGTTCATTTCAGCAAATGTGGTTCTCCAAGTCTGAGTTAGTATACTCTCATCATATTTCCTTTAGCGTCCATTTGATATGA 1410 41.63 MKFGSYDLFSTRICQIYFDDFFLFGYSDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGSIDQMEVDDPVNTDKNSVSAVDSKISKNIDTEKLKGKRKLYVGSQALGFRRDYMEVVVAPIKDGVIVDWDMVDSIWDHAFRECLLVDPKEHPMLLAEPSFNSQQQRERTAELMFEKYNVPALFLAKNAVLTSFASGRATSLVVDSGGGSTTVAPVHDGYVLQKAVSSSPIGGEVLTDCLVKSLESKGIVIKPRYSFKRKEIRPGDFQAVDLDFPNTTESYRLYSQRVIASDIKECVCRAPDSPYDESAYSNIPMTPYELPDGQTIEIGADRFKIPDILFNPSLVQQTIPGMETFAETASMVRGLPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSELVYSHHISFSVHLI 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6880846 6888208 + Bda023731.1 Bda06g00486 8068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00486 469 Gene3D Actin; Chain A, domain 4 233 346 - -
Bda06g00486 469 Gene3D - 207 408 - -
Bda06g00486 469 Gene3D - 414 464 - -
Bda06g00486 469 SMART actin_3 30 464 IPR004000 -
Bda06g00486 469 Pfam Actin 28 455 IPR004000 -
Bda06g00486 469 SUPERFAMILY Actin-like ATPase domain 28 204 IPR043129 -
Bda06g00486 469 PANTHER ACTIN 28 455 IPR004000 -
Bda06g00486 469 Gene3D - 25 206 - -
Bda06g00486 469 CDD NBD_sugar-kinase_HSP70_actin 122 227 - -
Bda06g00486 469 PANTHER - 28 455 - -
Bda06g00486 469 SUPERFAMILY Actin-like ATPase domain 197 455 IPR043129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00486 K11340 ACTL6A, INO80K; actin-like protein 6A - zju:107417842 757.288
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00486 Bda-Chr6:6880846 Bda11g01374 Bda-Chr11:16934926 3.06E-84 dispersed
Bda13g00075 Bda-Chr13:980608 Bda06g00486 Bda-Chr6:6880846 4.57E-12 dispersed
Bda06g00486 Bda-Chr6:6880846 Bda15g00357 Bda-Chr15:6440329 2.68E-83 transposed
Bda06g00486 Bda-Chr6:6880846 Bda14g00128 Bda-Chr14:873558 2.68E-83 transposed
Bda06g00486 Bda-Chr6:6880846 Bda15g00349 Bda-Chr15:6357586 2.68E-83 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g350 . . Bda06g00486 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0697 . . . . . . . . . . . Bpe07g00726 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00370 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009830 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00486 Bda_Chr06 FPKM 1.516299 1.334911 1.645856 1.598966 6.487633 5.862026 6.959415 0.953 1.182049