Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00490 ATGGCTTGGAGGAGGGTGTTGAAGGCTGTACAGGCACTGGTGGCCCACAGTTCTCTCTTTTGCTTCACACTTCTGCTCGTTTTCAAGCTCGATCACCTTGTTTCCTATAGTTGGTGGGTAATTTTTTTCCCGCTGTGGGCCTTTCATGCAGTCGTTGCTCGAGGAAGGTTCTCATTACCTGCCCCATCAGTTCCACACAATCGCAATTGGGCACCTTGCCATGCTGTTGTTGCCACGCCCTTGCTTATTGCATTTGAATTGCTTCTTTGTATATATCTTGAGAGTATATATGTACATGGTTTTCCAGCACTCAGTTTGAAGATTGTCTTTCTTCCAGTATTGGCATTTGAAATGACTATTTTAATTGATAATTTCAGAATGTGTAGGGCTCTTATACCGGGTGATAATGAAGGCTTGAATGATGAGGCTATATGGGAGACTCTTCCTCATTTCTGGGTTGCAATTTCTATGGTCTTCTTTGTTGCTGCTACTATCTTCACCCTCCTAAAGCTTTGTGGTGATGTTGGTGCCATTGGCTGGTGGGACTTGTTTATAAATTTTGGAATTGCGGAGTGCTTTGCATTTCTTGTCTGTACAAAGTGGTCTAATCCTATTATTCACAGAAATTCTAGCAGTGGAGAAGCAACTTCTTCTTCTATGATTATTAGATATCTTGATTGGGGGAGTGGTTTAATACTCTCCCCCCAGGAAGATGAACAACAAGATAGAATATGTGGCCTTCAAGATATTGGAGGCCATATAATGAAAATTCCGATTATTGGCTTCCAAATCCTTCTTTGCATGCGCCTAGAGGGAACTCCAGCTAATGCTAAATATATACCACTCCCAGCTCTTTTTTCACCTCTTTTTCTGCTGCAAGGGGCTGGTGTATTATTTTCAGCATCGATATTGGTGGAGAGGATTGTTCTTCTCCGGCGAAGTGGATTTGGCACTGGGTTGTATTTCAGATTTTCTTCAAAAGCCAATGACTGTTTTGAGTTCTTTCATCGTGGATCAAGGCTTTTGGGTTGGTGGTCAATTGAAGAAGGAAATCGTGAGGAAATGGCCCGATTATTTCATGAAGCAACATCTGGGTATAATACATTCTCTGGTTATCCTCCTGAGATTGTCAAAAAAATGACCAAGAAAGATCTTGCTGAGGAGGTCTGGAGGCTTCAAGCTGCTCTTGGCGAGCAGACTGAAATCACGAAATACAGCCGTCAGGAGTACGAAAGACTTCAGACTGAGAAGGTGTTATGTCGAGTTTGCTTTGAGAGAGAGATCAGCGTTGTCCTTCTTCCGTGTAGGCATCGAATACTTTGCAGTATGTGCTCGGCAAAGTGCAGAAAATGTCCGATATGCCGAGTCTCTATCGAGGAGCTTTTACCTGTATATGATGTTTAG 1404 42.81 MAWRRVLKAVQALVAHSSLFCFTLLLVFKLDHLVSYSWWVIFFPLWAFHAVVARGRFSLPAPSVPHNRNWAPCHAVVATPLLIAFELLLCIYLESIYVHGFPALSLKIVFLPVLAFEMTILIDNFRMCRALIPGDNEGLNDEAIWETLPHFWVAISMVFFVAATIFTLLKLCGDVGAIGWWDLFINFGIAECFAFLVCTKWSNPIIHRNSSSGEATSSSMIIRYLDWGSGLILSPQEDEQQDRICGLQDIGGHIMKIPIIGFQILLCMRLEGTPANAKYIPLPALFSPLFLLQGAGVLFSASILVERIVLLRRSGFGTGLYFRFSSKANDCFEFFHRGSRLLGWWSIEEGNREEMARLFHEATSGYNTFSGYPPEIVKKMTKKDLAEEVWRLQAALGEQTEITKYSRQEYERLQTEKVLCRVCFEREISVVLLPCRHRILCSMCSAKCRKCPICRVSIEELLPVYDV 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6944810 6949662 - Bda023736.1 Bda06g00490 8072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00490 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 467 - -
Bda06g00490 467 SUPERFAMILY RING/U-box 411 462 - -
Bda06g00490 467 SMART ring_2 420 454 IPR001841 -
Bda06g00490 467 Pfam Transmembrane Fragile-X-F protein 29 292 IPR019396 -
Bda06g00490 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
Bda06g00490 467 Pfam Zinc finger, C3HC4 type (RING finger) 417 460 - -
Bda06g00490 467 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 467 - -
Bda06g00490 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 465 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda06g00490 Bda15g00656 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00490 Bda-Chr6:6944810 Bda15g01073 Bda-Chr15:19967430 5.22E-09 dispersed
Bda01g02099 Bda-Chr1:57097521 Bda06g00490 Bda-Chr6:6944810 0 transposed
Bda04g00715 Bda-Chr4:55937042 Bda06g00490 Bda-Chr6:6944810 3.54E-07 transposed
Bda11g01579 Bda-Chr11:49021074 Bda06g00490 Bda-Chr6:6944810 4.14E-150 transposed
Bda15g00656 Bda-Chr15:10037769 Bda06g00490 Bda-Chr6:6944810 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00490 - - tcc:18604055 822.002