Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00491 ATGTTTGAGTCAATTGCTCGTGATATCCTTCTGGAGAGAACAGATCATACCATCGAGCTTTATGAGGGAAGTGGCTCAAGTTGGAGACTGATCAAGAGTGGCACTCCTGGGAATCTTGGTAGCTTTGAGGACATTTTGTTTGCAAACAATGAGATGCAGGAAACCCCAGTTGTTGTTTCTTTATTTCCTAGCTTCCGAGAAAATGGATGTACTATTGGATTAGGATATATTGATCTAACTAAAAGACTACTGGGTTTGGCTGAATTTCCTGATGATAGCCACTTTACTAATGTGGAGTCAGCCTTGGTTGGTTTAGGTTGCAAGGAGTGTCTCTTGCCTCTAGAAAGTGGCAAGTTTAGCGAAATTAAGGCTTTACATGACACATTAACTAGATGTAGTGTCATGCTAACAGAGAGGAAAAAAACAGACTTCAAAATGAGAGATTTAATGCAGGACCTTGCTAGGCTTGTCAAAGGTTCTGTCGAACCAGTGAAGGATTTGGTGTGTGGGTTTGAGTTTGCACCTGGAGCTTTAGGGGCATTGATATCATATGCAGATTTACTTGCAGATGAGTGCAATTATGGAAATTATAGTATCATGAGGTACAATCTTGATAGTGTGATGAGGTTAGACACTGCTGCCATGAGGGCACTAAACATCCTGGAGAGCAAAACTGATGCAAACAAGAATTTCAGTTTGTCTGGTCACATTAATCGAACATGTACTGCTGGAATGGGAAAACGACTACTGCACAAGTGGCTAAAACAGCCTTTGCTGGATGTGAAAGAAATTAATTGCAGGCTTGATTTGGTTCAGGCTTTTGTGGAGGATGCTGCTTTGCGACAAAATCTGAGACAACATCTCAAAAGAATATCGGATTTGGAGAGATTATCACAGAGTCTTGAAAAAAAAAGAGCTGGTTTGCAGCATGTTGTTAAACTTTATCAGTCAAGTATCAGACTTCCATACATAAAAAGTGCTTTGGATCAATATGATGGACAATTTTCCTCTCTGATCAAGGAAAGATATTTAGATTCTCTTGATTTCTGGACAAACGATGAGCACCTGAACAAGTTTATCTGCCTTGTTGAAACTTCAGTAGACCTTGAACAACTTGAGAATGGTGAATATATGATCTCATCAAGTTATGATTCTGCATTGTCTGAGTTAAAGAATGAGCAAGAGTCATTGGAGCATCAAATACACAATTTGCATAAAGAAACTGCCAATGATCTTGATCTGGTTATAGATAAAGCATTAAAGTTAGATAAAGGCACACAATTTGGACATGTTTTCAGAATAACAAAGAAGGAAGAACCAAAAATAAGGAAAAAGCTCTCTTCCCAATTTATTGTGCTTGAAACTAGAAAAGATGGAGTGAAATTTACAAATACAAAGCTTAAAAAGTTGGGAGACCAGTATCAAAAGAAACTAGAGGAGTATAAGCGATTCCAGAGAGAGCTTGTTACCCGGGTTGTACAAACTGCAGCAACCTTCTCTGAGGTATTTGGATCGGTAGCTGAGATGCTTTCAGAGTTGGACGTTTTGCTTAGTTTTGCTGATTTGGCCTCTTGTTCTCCTAATCCTTACACCAGACCACACATCACTGCCTCGGATCAGGGAGATATTGTATTAGAAGGGTGTAGACACCCATGCGTGGAGGCTCAGGACTGGGTGAGGGGTGAAAGTTGGTTTCAGATTATTACTGGGCCCAACATGGGAGGAAAATCAACATTTATTAGACAGGTTGGAGTAAATATTCTGATGGCACAAGTAGGTTGTTTTGTTCCTTGTGATAAAGCCAGTATATCTGTACGTGATTGCATTTTTGCTCGCGTAGGTGCTGGAGACTGCCAACTGCGCGGCGTTTCTACATTTATGCAAGAGATGCTTGAAACTGCATCTATATTGAAAGGAGCAACTGATAAGTCACTGATAATAATTGATGAGTTGGGCCGTGGGACATCCACGTATGATGGATTCGGCTTAGCGTGGGCCATTTGTGAGCATATTGTCGAAGAGATCAAAGCTCCTACTTTGTTTGCAACTCACTTTCATGAACTGACAACATTAGCTCATCAAAATGGTAATGTGCCTGATCCACAACATATTATTGGCGTGGCAAACTATCATGTTAGTGCGCACATAGACTCCTCAAGTCGCAAACTAACCATGTTGTACAAGGTTGAGCCAGGGCCTTGCGATCAAAGTTTCGGCATCCACGTTGCAGAGTTTGCCAATTTTCCAGCTAGTGTGGTGGCCCTTGCCAGAGAGAAGGCTGCTGAATTGGAAGATTTTTCACCTGAGGCATCCATTTTAAATGATGATAAAGAAAAGGTGGGTTCAAAACGAAAAAGAGAAATAGGGTCAGACGATGTATCGAAAGGCGTGGCCCGGGCTCGCAAATTTCTGAAATGTTTTGCTGATTTGCCATTGGATAAGATGGGTATGAAGGAGGCTTTGGAGAATGTTGTCAAATTGAAAGACGAGTTAAAGAAAGATGCAGCTCACTCTCATTGGCTTCAGCAATTCCTTTAA 2538 40.82 MFESIARDILLERTDHTIELYEGSGSSWRLIKSGTPGNLGSFEDILFANNEMQETPVVVSLFPSFRENGCTIGLGYIDLTKRLLGLAEFPDDSHFTNVESALVGLGCKECLLPLESGKFSEIKALHDTLTRCSVMLTERKKTDFKMRDLMQDLARLVKGSVEPVKDLVCGFEFAPGALGALISYADLLADECNYGNYSIMRYNLDSVMRLDTAAMRALNILESKTDANKNFSLSGHINRTCTAGMGKRLLHKWLKQPLLDVKEINCRLDLVQAFVEDAALRQNLRQHLKRISDLERLSQSLEKKRAGLQHVVKLYQSSIRLPYIKSALDQYDGQFSSLIKERYLDSLDFWTNDEHLNKFICLVETSVDLEQLENGEYMISSSYDSALSELKNEQESLEHQIHNLHKETANDLDLVIDKALKLDKGTQFGHVFRITKKEEPKIRKKLSSQFIVLETRKDGVKFTNTKLKKLGDQYQKKLEEYKRFQRELVTRVVQTAATFSEVFGSVAEMLSELDVLLSFADLASCSPNPYTRPHITASDQGDIVLEGCRHPCVEAQDWVRGESWFQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEEIKAPTLFATHFHELTTLAHQNGNVPDPQHIIGVANYHVSAHIDSSSRKLTMLYKVEPGPCDQSFGIHVAEFANFPASVVALAREKAAELEDFSPEASILNDDKEKVGSKRKREIGSDDVSKGVARARKFLKCFADLPLDKMGMKEALENVVKLKDELKKDAAHSHWLQQFL 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6951024 6955839 - Bda023737.1 Bda06g00491 8073

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00491 845 Coils Coil 817 837 - -
Bda06g00491 845 CDD ABC_MSH2_euk 544 764 - -
Bda06g00491 845 Coils Coil 387 407 - -
Bda06g00491 845 Pfam MutS domain II 66 197 IPR007860 GO:0005524|GO:0006298|GO:0030983
Bda06g00491 845 SUPERFAMILY DNA repair protein MutS, domain III 211 524 IPR036187 -
Bda06g00491 845 Gene3D - 437 530 - -
Bda06g00491 845 Gene3D - 208 436 - -
Bda06g00491 845 Gene3D - 531 843 IPR027417 -
Bda06g00491 845 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 2 829 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Bda06g00491 845 SMART DNAend 228 556 IPR007696 GO:0005524|GO:0006298|GO:0030983
Bda06g00491 845 Coils Coil 284 311 - -
Bda06g00491 845 Pfam MutS family domain IV 383 476 IPR007861 GO:0005524|GO:0006298|GO:0030983
Bda06g00491 845 PANTHER DNA MISMATCH REPAIR PROTEIN MSH2 2 829 IPR032642 GO:0003677|GO:0005524|GO:0006298|GO:0032300
Bda06g00491 845 PIRSF MSH2 1 845 IPR011184 GO:0005524|GO:0006298|GO:0030983
Bda06g00491 845 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 530 765 IPR027417 -
Bda06g00491 845 Pfam MutS domain V 566 764 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bda06g00491 845 Pfam MutS domain III 214 520 IPR007696 GO:0005524|GO:0006298|GO:0030983
Bda06g00491 845 Gene3D MutS, connector domain 36 205 IPR036678 GO:0005524|GO:0006298|GO:0030983
Bda06g00491 845 ProSitePatterns DNA mismatch repair proteins mutS family signature. 644 660 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bda06g00491 845 SMART mutATP5 563 761 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bda06g00491 845 Coils Coil 467 487 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00491 K08735 MSH2; DNA mismatch repair protein MSH2 - qsu:112024698 1398.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00491 Bda-Chr6:6951024 Bda07g01864 Bda-Chr7:36055148 3.77E-52 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g364 . . Bda06g00491 . . . . Bma12g00941 . . Cma10g00249 . Car10g00237 . . . . . . . . . . . Cla06g01486 Cam06g1640 Cec06g1700 Cco06g1698 Clacu06g1606 Cmu06g1555 Cre06g2367 . . . Cone19ag0263 . . . . . Blo15g00365 . . Bpe07g00731 . . . . Cmo10g00269 . . . . . . Cpe18g00743 . . . . . . . . . . . . . . Lsi06g01348 Csa01g00363 Chy02g02380 Cme02g01765
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007788 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00491 Bda_Chr06 FPKM 1.403587 2.691867 3.411686 4.165345 1.886261 2.174685 1.020692 1.733884 2.347703