Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00495 ATGGATTCAAGGAGAGTAGTGGTAGTAGTTGAAGAGACGGAAGTATCAAGAATAGCTCTAAAATGGGCGCTTCAAAACCTGGTTCGCTATGGAGATTTAATGATTCTCCTCCATGTTTTTCCTGCAACTAAAAGCAAGAAGAAGACGAGGCTTCTCCGTCTAGAAGCCTATCAATTGGCCCTGTCATACAAAGACATAACCAACTCTTTCCCAAATACGAAGGTGGAAATCGTTGTTGCAGAAGGAGATGAAGATGGAGGGAAAATTGCAGCCATGGTTAGAGAGATTGGAGCTTCTGCACTTGTTCTTGGACTCCATGATCACAGTTTTCTCTATAAGATGGCAATGACCCACAAAAGTATACCAAATGTTTTCAACTGCAGTATCTTGGCAATCAAGCAGCAGCCCACTGCTGTCTCGGATTTCACAGCCAGCCATGGAGGAGAACGGCCGCCGTCTCTTCCATGTTCTTCCGCCGTGGACTTCTCCCTCATTGACATTGCTAGACTGCAGGTGCCTACCGTTGATCCTCCACCAAAAATTCCATATGCAATCTGTCCAGACCCATCAGCAATTATCTGGAGAACAAGAAGATCAAGCGGAAAGTGA 609 45.32 MDSRRVVVVVEETEVSRIALKWALQNLVRYGDLMILLHVFPATKSKKKTRLLRLEAYQLALSYKDITNSFPNTKVEIVVAEGDEDGGKIAAMVREIGASALVLGLHDHSFLYKMAMTHKSIPNVFNCSILAIKQQPTAVSDFTASHGGERPPSLPCSSAVDFSLIDIARLQVPTVDPPPKIPYAICPDPSAIIWRTRRSSGK 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7053245 7054771 - Bda023743.2 Bda06g00495 8077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00495 202 CDD USP_Like 16 111 - -
Bda06g00495 202 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 1 200 - -
Bda06g00495 202 Pfam Universal stress protein family 4 116 IPR006016 -
Bda06g00495 202 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 4 133 - -
Bda06g00495 202 Gene3D HUPs 1 133 IPR014729 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00495 - - - zju:107418888 244.202
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00495 Bda-Chr6:7053245 Bda14g00892 Bda-Chr14:6919759 2.59E-07 dispersed
Bda11g01768 Bda-Chr11:52516097 Bda06g00495 Bda-Chr6:7053245 7.58E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g373 . . Bda06g00495 . . . . Bma12g00944 Cmo13g01084 . . . . . . Cpe20g00105 . . . . . . . . . . . . . . . . . . . Lsi02g00371 Csa01g00850 Chy12g01456 Cme12g01896 . Blo15g00358 . . Bpe07g00736 . . . . . . Cma13g01043 . Car13g00875 . . . Bhi08g01202 . . . . . . Cla04g01112 Cam04g1164 Cec01g1675 Cco01g1723 Clacu04g1192 Cmu04g1172 Cre01g1470 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009831 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00495 Bda_Chr06 FPKM 29.892395 31.811754 28.144493 27.152458 30.616039 35.890129 31.61046 36.708427 35.668106