Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00505 ATGAAAGTTCGATCAGTGAAACTTCGAGAAGCTCATAAGCCTGCAAATGGCGGACCCTCTTTCTGCTCTGTCTTGTGGGATCAACAGTCGACCCATCTGGTCACCGCATCGGCTTCCGACTCCGCCATTGCCATCCACGATCCTCTTCTTCTTTCCAGTCCGCCTAAGATCCTTCGACACCATCGAGACGGAGTTACAGCGCTCGCTCTTAGCCCCAATTCCACTTGTCTCGCTTCCGGATCTGTAGATCATTCAGTGAAGCTTTACAAGTTCCCAGGTGGAGAGTTTCAGACCAATGTTACAAGATTCACATTGCCGATACGTGTCCTTGCTTTTAATAGGTCTGGTAGCCTTTTGGCAGCTGCTGGTGACGATGAGGGTATAAAGCTTATTAACACAGTTGACGGTTCAATAGCAAGAGTTCTTAAAGGACACAAGGGATCAATCACTGGCTTAGCTTTTGACCCTATTGGTGAATATTTGGCATCACTGGATTCAATTGGAACTGTCATAATCTGGGAACTCCAAACTGGAGAAACGATACATAACCTTAAAGGCATAGCTCCTCACACAAGTTCGGATAATTCCATGTTGAACATACTTAGTTGGAGTCCAGATGGAGTGATCTTAGCTGCCTCTGGACTTAAAAATGATGTGGTTATGTATGACAGAGATACAGCGGAAAAGTTGTTCTCTTTGAGAGGTGATCATATTCAACCTGTTTGTTTCTTTTCATGGTCACCTAATGGGAAGTATATGGCCACTTCTTCTCTTGATAGGCAGGTTTTAATATGGGATGTTGAGAGGAGGCAGGACATTGACAGGCAGAAATTTGATGATAGGATATGCTGCATGGCGTGGAAACCGATTGGCAATTCACTGGCTCTTATCGATGTCACAGGCAAGTTTGGGGTGTGGGAGTCGGTTGTTCCTACGTCTATGAAATTGCCCACCGAAGGTATCTCAAGCTTGAAATCAAAGAACAGTAATGGCCTTCTATTGTTTGATGAAGAGGATAAAGAGCATACTGCATCTGGTAGTTTGAGTGATCTTGGTGAAGATAGTATTGGAGAATCTGAGCCACCAAGTAGGAAAAGATTGCGGAAGCAATCTACTTATGAAGAAGATTCTGAGGAAGTTGACAACTATGATATGAAATTATCCCCAAAAGTGGAATCTCTTAAAAAATCACATCGGGTTCACAAAAGGGAAGGCCAGGATAGCCGGAATAATCAACAAGGCCTTATAAGATGTTCTGTAATGAAAATGCAGGAAGCCTTTCAGCCAGGAGCAACTCCAGTTCAGCCCGGAAAAAGGCGCTTTTTGTGCTACAACATGCTCGGGAGTATAACCACAATTGATCATGATGGATTTTCTCATATAGAGATTGATTTTCATGATACTAGTAGCGGTCCACGAGTTCCATCAATGAATGATCATTTTGGGTTTACAATGGCCTCGCTAAATGAAAGTGGCTGTGTTTTTGCCAACACTTGCAAGGGCGAGAAGAACATGAGTACTCTCATGTATCGGCCATTCAGTAGTTGGGCAAACAATAGTGAGTGGTCTATGAGATTTGAAGGAGAAGAAGTAAAAGTTGTGGCAGTCGGTTGTGGTTGGAAGCATGTACTCTCACTGGATGGGCCAGTGGTCACTGCCTCAGGGTTCGACCATGAACTTGCTGTTGTAACTCACGCTTCTGACTGTCTTCCTTCTAATGATCAGATGTTAGAGTTCAGAGTATTCGACATTTCTAATGGGACACTGCCCATGAGAGGACGGCTGCCATTAACTCCAGGTTCATCCCTGACTTGGTTTGGATTTAGTGAAGATGGCCAGTTAAGTTCATATGATTCTAAGGGCCTGGTAAGGGTGTTTACAAGGCAGTATGGTGGTAGCTGGCTCCCACTTTTCAGTGCGAGTAAATTGAAGCCCGAAGAAAACTATTGGGTTGTCGGGTTGAGCTCAAGCAAGTTGTTCTGTATAGTTTGTAAAAAGCCCGAGTCATATCCTCAGGCAAGTTCCCTTCTCAATGGTTTCACCATCTCCTGCTATTTGTTGAGTTTCAGTCCTCTGCAGGTAATGCCAAAACCAGTTCTCTCTCTACAAGATTTTTCATTTCCTCTTGCTCTGTCTGATCTTGGAGCAGAAGCCCTTGAAAACGAGTTTATGCTGAACAACATGCATCTTTGGCAGATTCAGAACAAAATGGAGGAATTTTCTAGTATGGATTTTGATACCACGGCACTCGATGACGAGGCCTTCGCCATTGAAGCCGCTCAAGATAGGTGTATTTTGAGGCTCATCGCGTCGTGTTGCAATGGTGACAAACTGATCAGAGCAACTGAACTTGTGAAGCTCTTATCGCTGGATAAATCAGTAAAAGGTGCAATAAAGCTTGTCACTGCTCTGAAGCTCCCTAACTTGGCCGAACGATTCAATAGCATATTAGAGGTAGGCCGCCCTCCGATTTCCGGCAGCTCTATCCGTTCCAATTTACAAAATTCTCATTTTTGCAAGTTATATTTCTACAGGAAAGGCTGCAAAATGGGAAAAAAGAGAATCCAGATATCAGCCTCCCAATCTTGA 2589 43.96 MKVRSVKLREAHKPANGGPSFCSVLWDQQSTHLVTASASDSAIAIHDPLLLSSPPKILRHHRDGVTALALSPNSTCLASGSVDHSVKLYKFPGGEFQTNVTRFTLPIRVLAFNRSGSLLAAAGDDEGIKLINTVDGSIARVLKGHKGSITGLAFDPIGEYLASLDSIGTVIIWELQTGETIHNLKGIAPHTSSDNSMLNILSWSPDGVILAASGLKNDVVMYDRDTAEKLFSLRGDHIQPVCFFSWSPNGKYMATSSLDRQVLIWDVERRQDIDRQKFDDRICCMAWKPIGNSLALIDVTGKFGVWESVVPTSMKLPTEGISSLKSKNSNGLLLFDEEDKEHTASGSLSDLGEDSIGESEPPSRKRLRKQSTYEEDSEEVDNYDMKLSPKVESLKKSHRVHKREGQDSRNNQQGLIRCSVMKMQEAFQPGATPVQPGKRRFLCYNMLGSITTIDHDGFSHIEIDFHDTSSGPRVPSMNDHFGFTMASLNESGCVFANTCKGEKNMSTLMYRPFSSWANNSEWSMRFEGEEVKVVAVGCGWKHVLSLDGPVVTASGFDHELAVVTHASDCLPSNDQMLEFRVFDISNGTLPMRGRLPLTPGSSLTWFGFSEDGQLSSYDSKGLVRVFTRQYGGSWLPLFSASKLKPEENYWVVGLSSSKLFCIVCKKPESYPQASSLLNGFTISCYLLSFSPLQVMPKPVLSLQDFSFPLALSDLGAEALENEFMLNNMHLWQIQNKMEEFSSMDFDTTALDDEAFAIEAAQDRCILRLIASCCNGDKLIRATELVKLLSLDKSVKGAIKLVTALKLPNLAERFNSILEVGRPPISGSSIRSNLQNSHFCKLYFYRKGCKMGKKRIQISASQS 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7149537 7156336 - Bda023756.1 Bda06g00505 8087

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00505 862 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Bda06g00505 862 SMART WD40_4 135 174 IPR001680 GO:0005515
Bda06g00505 862 SMART WD40_4 226 266 IPR001680 GO:0005515
Bda06g00505 862 SMART WD40_4 2 47 IPR001680 GO:0005515
Bda06g00505 862 SMART WD40_4 269 307 IPR001680 GO:0005515
Bda06g00505 862 SMART WD40_4 51 90 IPR001680 GO:0005515
Bda06g00505 862 SMART WD40_4 93 132 IPR001680 GO:0005515
Bda06g00505 862 SMART WD40_4 177 223 IPR001680 GO:0005515
Bda06g00505 862 Gene3D - 2 194 IPR015943 GO:0005515
Bda06g00505 862 Gene3D - 195 308 IPR015943 GO:0005515
Bda06g00505 862 MobiDBLite consensus disorder prediction 357 388 - -
Bda06g00505 862 SUPERFAMILY Peptidase/esterase 'gauge' domain 235 656 - -
Bda06g00505 862 CDD WD40 22 295 - -
Bda06g00505 862 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 818 - -
Bda06g00505 862 SUPERFAMILY WD40 repeat-like 22 307 IPR036322 GO:0005515
Bda06g00505 862 Pfam WD domain, G-beta repeat 230 266 IPR001680 GO:0005515
Bda06g00505 862 Pfam WD domain, G-beta repeat 140 163 IPR001680 GO:0005515
Bda06g00505 862 Pfam WD domain, G-beta repeat 55 89 IPR001680 GO:0005515
Bda06g00505 862 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Bda06g00505 862 MobiDBLite consensus disorder prediction 393 412 - -
Bda06g00505 862 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Bda06g00505 862 MobiDBLite consensus disorder prediction 393 408 - -
Bda06g00505 862 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
Bda06g00505 862 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Bda06g00505 862 MobiDBLite consensus disorder prediction 343 388 - -
Bda06g00505 862 Pfam Minichromosome loss protein, Mcl1, middle region 426 541 IPR022100 -
Bda06g00505 862 Pfam Minichromosome loss protein, Mcl1, middle region 542 673 IPR022100 -
Bda06g00505 862 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Bda06g00505 862 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00505 K11274 WDHD1, CTF4; chromosome transmission fidelity protein 4 - qsu:112010612 1233.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00505 Bda-Chr6:7149537 Bda04g00634 Bda-Chr4:54972794 6.35E-07 dispersed
Bda06g00505 Bda-Chr6:7149537 Bda04g00146 Bda-Chr4:3969533 1.04E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g412 . . Bda06g00505 . . . . Bma12g00953 . . . Cma11g00234 . Car11g00211 Sed08g0309 . Cpe04g01438 Bhi02g00049 Tan09g1996 Cmetu02g0986 . Hepe09g0298 . . Cla06g01517 Cam06g1673 Cec06g1734 Cco06g1730 Clacu06g1639 Cmu06g1587 Cre06g2398 Cone11ag0342 . . . . . . . . Blo15g00350 . . Bpe07g00744 . . . . . Cmo11g00237 . . . . . . . . . . . . . . . . . . . . Lsi06g01383 Csa01g00325 Chy02g02416 Cme02g01799
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010498 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00505 Bda_Chr06 FPKM 1.0 1.301612 1.073525 0.594518 5.276978 4.471019 4.647596 0.0 0.0