Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00518 ATGAGGTGGGAAAGGCTCCAGCTACCTGTTAGACAAGGGCAGGAGGGAGCTCTGCAAGAAGTTGGTGAGATATCCGGGCCAGGAAAGAGGTGGGGTCACTCTTGCAACGCCATTAAAGAAGGAAGATATCTCTATGTCTTCGGAGGTTATGGAAATGAAAATTGTCAAACCAACCTTGTACATGTCTACGACACTGCTAATAAAACATGGAGTGAGCCAGAGATAAATGGCATTCCACCGGTTCCGAGAGACAGTCACACTTGTACCACGGTTGGTGATAATCTTTTAATTTTTGGGGGCACCGATGGGACTAACCCTCTTAAAGATTTGCTTATATTGGACACTTCTTTAAATACATGGGCGTATCCAAACTTACGAGGTGAAGGGCCAGAGGCACGAGAGGGTCATAGTGCAGCTCTAGTTGGAAAACGACTCTTTATTTTTGGTGGCTGTGGAAAATCTTCGGATAATGTTGAAGTATACTATAATGATCTTTATATTTTGAATACTGAGACATTTGTATGGAAACGTGCAACTACGTCAGGCGCTCCACCTTCTCCCCGCCATAGCCATACATGTTCATCTTGGAAGAATAAAGTCATTGTGATTGGGGGAGAAGATGCACATGATTATTATTTGTCTGATGTTCACATTCTTGATACAGACACTCTAAATTGGACGGAGCTGAGCACTTCTGGACAATTCTTGCTGCCTCGAGCTGGTCATACTACTGTTGCCTTTGAAAACCACTTGTTTGTGTTTGGCGGTTTTACAGATGCACAAAACTTATTCAATGATTTGTACATGCTTGATCTTGATACTGGTATTTGGACTAAGGTCCTAACTTCAGGCCATGGACCCTCTGCTAGATTTTCTGTTGCTGGGGCCTGTCTGGATCCACAAAAGGGCGGTGTTCTTGCATTCATAGGTGGTTGTAATAGAAGCCTTGAGGCTCTAGACGACATGTATTTCTTAAACACAGGATTTCCCAGGGAAAATGAAGGGAGACTTGATAAGTTGTCTCTAAGGAAGCAATTGAAGCTGAAGTGTCAAGAACAGAATCAGAATTTTCTTCGCGATAAAGCTCGTGTGAAAATTGGGGCTGAGTCAGATATATACCAGCCAATGCCGGTGCATGCTCATGGTCATCAAAGTGGCCATAATTATCCTTTGAATCAATCCCTCCATCTAAACGGAAAGAAGATGTTTCGAGCAAAGATCACTGAAAGCATCCTAAATGGATACACCATCGAAACTGTCATTGATGGAAGGCCTCTCCATGGAGTATTGTTAGCCAACAAGCCCAACTATATTGACTTTTCCCGTCATTCTAGTCGGAAAAGGACTGCTGGGAATACTGGCAATGTTTTATTGAATGGGGATTTCAACTCAAAATCCAAGAGTTCTCGGGTTGTCAAGTTGGATGGTGTAAATGAGAGATTAGTGGACGGTGCCCAAGAAAAGGTGTCCCCATTAGATGAACATCACATGAACATCGATTCTGATCTAGCACCGTCTAATGCTTCTCAGCCCCACAAGGTAATTCCAAATACAGATTTAACCATGCCTCCTCCTTCAGAGCCAGATAATATTCAAATGCATGATGCAAGGGATTCCAACACTCTAGACGAGACTGAGGATAACCAAAACAACTTGCAGGATTCAAAAGGCAATGTTTTGAAGGAGGATTCTCTAGTAGTAGATAATAATGATACCATTGTTTCAATCCCAAGCCAAGGTGAAAGAATGGGTATTCCATGGGATGTAGAATCTGATGACAAAACACAGAGTCGACGAGCCGAAGAACAAGAATCTGCAAAATGA 1824 42.76 MRWERLQLPVRQGQEGALQEVGEISGPGKRWGHSCNAIKEGRYLYVFGGYGNENCQTNLVHVYDTANKTWSEPEINGIPPVPRDSHTCTTVGDNLLIFGGTDGTNPLKDLLILDTSLNTWAYPNLRGEGPEAREGHSAALVGKRLFIFGGCGKSSDNVEVYYNDLYILNTETFVWKRATTSGAPPSPRHSHTCSSWKNKVIVIGGEDAHDYYLSDVHILDTDTLNWTELSTSGQFLLPRAGHTTVAFENHLFVFGGFTDAQNLFNDLYMLDLDTGIWTKVLTSGHGPSARFSVAGACLDPQKGGVLAFIGGCNRSLEALDDMYFLNTGFPRENEGRLDKLSLRKQLKLKCQEQNQNFLRDKARVKIGAESDIYQPMPVHAHGHQSGHNYPLNQSLHLNGKKMFRAKITESILNGYTIETVIDGRPLHGVLLANKPNYIDFSRHSSRKRTAGNTGNVLLNGDFNSKSKSSRVVKLDGVNERLVDGAQEKVSPLDEHHMNIDSDLAPSNASQPHKVIPNTDLTMPPPSEPDNIQMHDARDSNTLDETEDNQNNLQDSKGNVLKEDSLVVDNNDTIVSIPSQGERMGIPWDVESDDKTQSRRAEEQESAK 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7453731 7459625 + Bda023773.1 Bda06g00518 8100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00518 607 Pfam Galactose oxidase, central domain 238 284 - -
Bda06g00518 607 Pfam Galactose oxidase, central domain 187 232 - -
Bda06g00518 607 Pfam Kelch motif 130 173 - -
Bda06g00518 607 Pfam Galactose oxidase, central domain 41 90 - -
Bda06g00518 607 Coils Coil 542 562 - -
Bda06g00518 607 SUPERFAMILY Galactose oxidase, central domain 24 258 IPR011043 -
Bda06g00518 607 MobiDBLite consensus disorder prediction 586 607 - -
Bda06g00518 607 MobiDBLite consensus disorder prediction 502 516 - -
Bda06g00518 607 Gene3D - 2 124 IPR015915 GO:0005515
Bda06g00518 607 Gene3D - 125 333 IPR015915 GO:0005515
Bda06g00518 607 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 1 472 - -
Bda06g00518 607 MobiDBLite consensus disorder prediction 485 607 - -
Bda06g00518 607 PANTHER KELCH REPEAT DOMAIN 1 472 - -
Bda06g00518 607 MobiDBLite consensus disorder prediction 485 500 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00518 - - - bhj:120072293 741.495
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00518 Bda15g00628 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00518 Bda-Chr6:7453731 Bda14g00049 Bda-Chr14:434926 5.69E-14 dispersed
Bda02g00940 Bda-Chr2:49520510 Bda06g00518 Bda-Chr6:7453731 3.60E-23 transposed
Bda08g01110 Bda-Chr8:25428377 Bda06g00518 Bda-Chr6:7453731 7.88E-29 transposed
Bda15g00628 Bda-Chr15:9421822 Bda06g00518 Bda-Chr6:7453731 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g454 . . Bda06g00518 Bda15g00628 Bpe12g00520 . . Bma12g00961 . . Cma10g00291 Cma11g00216 Car10g00273 Car11g00195 . . Cpe04g01452 Bhi02g00084 Tan09g2026 . . . . . Cla06g01533 Cam06g1691 Cec06g1754 Cco06g1752 Clacu06g1658 Cmu06g1605 Cre06g2417 . . . Cone19ag0039 . . . . . Blo15g00342 . . Bpe07g00752 . . Bma08g00247 . Cmo10g00310 Cmo11g00218 . . . . . Cpe18g00712 . . . . . . . . . . . . . . Lsi06g01405 Csa01g00306 Chy02g02432 Cme02g01819
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008147 2 4 2 2 2 0 2 0 0 1 0 0 2 1 1 2 0 1 1 0 1 1 1 1 1 1 1 1 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00518 Bda_Chr06 FPKM 74.53965 79.695755 214.524796 200.648575 130.362808 128.597687 116.110382 168.481384 179.92247