Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00521 ATGGCGAAGACTGCGACACCAGGTGGAATTTTGAAGATTCAGGCTGATCCAACGCCGGAATTGTCCTCGGAAGTCTCGGATTTAGTGCTTCAGGTCCTCGATCTTAAAGCCACGGGGAATCGTTACATGTTTACTGCCAGCGATGGAACTATGAAGTTGAAAGCTATTCTACCGTCGAATCTCTCTTCCGAGGTGATCTCAGGGAAGATTCAGAATCTAGGTCTTATTCGCATTCTTGATTATTCCCTCAATGACATCCCAAACAAGTCGGAGAAGTATATGATTGTGACTAAATGCGAGGTTGTTTCTCCTGCTCTTGAAATGGAGATTAAGAACGTAGCCAAAAGTGAGGAATCTGAATTGTTTCTGACACCAAAACGAGAAAATGACTGTGAGAGTGAAGTGAATGGAGAAAAACCAGGGATTCTTCTAAAGCCAAAGCCTGAAATGTTTGCAAAATCAGCAGCTCAAATTGTAAACGAACAAAAATCAAACTTGGCCCCAACTGCACGAATGGCCATGACAAGGAGAGTTCATCCTCTTCTTTCATTGAATCCCTACCAAGGCAATTGGACAATTAAAGTTCGTGTTACGAATAAGGAAGCTATGCGTTATTACAAGAATGCCAGGGGAGAAGGATGTGTCTTCAATGTCGAATTAACTGATGATGATGAAACCCAAATACAGGCAACAATGTTCAATGAGGCTGCTAGAAAGTTTTATGATAAATTTGAGCTTGGAAAGGTTTATTACATTTCAAAGGGAACTCTAAAGGTTGCTAACAAGAAATTCAGTACCGTGAAAAATGATTATGAAATGACTTTGAATGAGAATTCAGAGGTGGAAGAGGCCATCAACGAAGCTACTTTTGTGCCTGTGACGAAATTCAATTTTGTCCCAATTGATATGTTGGGTCCTTATGTGAATGGAAAAGAACTTGTTGATGTTATTGGAGTGGTTCAGAATGTTTCCCCTACAATCAGTATTCGAAGGAAGATCAGTAATGAAACTGCTCCGAAGCGTGACATAACTATTGCTGATGAGACGAAAAAAACAGTTGTAGTCTCACTATGGAATGAGCTCGCAACTAATGTGGGGCAGGAGTTACTCGACATGGTGGATCAATCGCCCGTAATTGCAATTAAATCTCTTAAAGTTGGAGATTTTCAAGGTGTATCTCTTTCATCAGTGAGTAAAAGCAAATTGCTAGTAAATCCAGGCACACCTGAGGCAAAAAAGTTAAAATTATGGTTTGATTCTGAAGGCAAAGGAACATCGATGGCGTCTGTTGGCTCTAGTTTGAGCCCATCATCCAAGAATGGAGGAAGGTCCATGTATTCTGACCGGACATCTTTGTCTTACATAATCCAAAACCCGTCATTAGGGGATGATAAGCCGATGTTCTTCAGCATTAGAGCATATATTAGCTCCATCAAACCTGATCAGACTATGTGGTACCGAGCTTGCAAGACTTGCAACAAGAAGGTGACTGATGCTATAGGTTCTGGATTTTGGTGTGAAGGTTGCCAGAAAAGTGATGGAGAATGCAGTTTAAGATACATAATGGTCGTTAGAATTTCTGATGCCAGCGGCGAAGTCTATCTCTCTCTTTTCAATGACGAGGCAGAAAAAATCATTGGATGCACAGCTGATGAGCTTGACAAAATGAAATCACAAATTGCTGAAGAGAATTCATATGAGACGAAATTGAAGGAGGCTACTTGGGTTCCTTATCTATTTAGAGTAAGCGTTTCTCAGAATGAATACAACAATGAGAAGAGGCAGAGGATTACTGCCAGAGCTGTTGCTCCTGTCGATTTTGCTTCTGAATCCAAACTTTTGCTTGAAGAAATTTCGAGTTCAAGAATTTCAAAATGA 1878 40.58 MAKTATPGGILKIQADPTPELSSEVSDLVLQVLDLKATGNRYMFTASDGTMKLKAILPSNLSSEVISGKIQNLGLIRILDYSLNDIPNKSEKYMIVTKCEVVSPALEMEIKNVAKSEESELFLTPKRENDCESEVNGEKPGILLKPKPEMFAKSAAQIVNEQKSNLAPTARMAMTRRVHPLLSLNPYQGNWTIKVRVTNKEAMRYYKNARGEGCVFNVELTDDDETQIQATMFNEAARKFYDKFELGKVYYISKGTLKVANKKFSTVKNDYEMTLNENSEVEEAINEATFVPVTKFNFVPIDMLGPYVNGKELVDVIGVVQNVSPTISIRRKISNETAPKRDITIADETKKTVVVSLWNELATNVGQELLDMVDQSPVIAIKSLKVGDFQGVSLSSVSKSKLLVNPGTPEAKKLKLWFDSEGKGTSMASVGSSLSPSSKNGGRSMYSDRTSLSYIIQNPSLGDDKPMFFSIRAYISSIKPDQTMWYRACKTCNKKVTDAIGSGFWCEGCQKSDGECSLRYIMVVRISDASGEVYLSLFNDEAEKIIGCTADELDKMKSQIAEENSYETKLKEATWVPYLFRVSVSQNEYNNEKRQRITARAVAPVDFASESKLLLEEISSSRISK 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7478794 7481976 - Bda023776.1 Bda06g00521 8103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00521 625 Gene3D - 432 620 IPR012340 -
Bda06g00521 625 SUPERFAMILY Nucleic acid-binding proteins 2 108 IPR012340 -
Bda06g00521 625 SUPERFAMILY Nucleic acid-binding proteins 447 620 IPR012340 -
Bda06g00521 625 CDD RPA1_DBD_A 180 283 - -
Bda06g00521 625 CDD RPA1_DBD_C 463 620 IPR013955 -
Bda06g00521 625 SUPERFAMILY Nucleic acid-binding proteins 178 288 IPR012340 -
Bda06g00521 625 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bda06g00521 625 CDD RPA1_DBD_B 313 419 - -
Bda06g00521 625 MobiDBLite consensus disorder prediction 424 444 - -
Bda06g00521 625 Pfam OB-fold nucleic acid binding domain 191 277 IPR004365 GO:0003676
Bda06g00521 625 Gene3D - 6 114 IPR012340 -
Bda06g00521 625 MobiDBLite consensus disorder prediction 425 444 - -
Bda06g00521 625 Pfam Replication factor-A C terminal domain 468 614 IPR013955 -
Bda06g00521 625 Gene3D - 291 431 IPR012340 -
Bda06g00521 625 PANTHER REPLICATION FACTOR A 1, RFA1 5 619 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bda06g00521 625 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 619 - -
Bda06g00521 625 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 5 619 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bda06g00521 625 Pfam Replication protein A OB domain 309 405 IPR031657 -
Bda06g00521 625 Gene3D - 177 286 IPR012340 -
Bda06g00521 625 SUPERFAMILY Nucleic acid-binding proteins 296 423 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00521 Bda-Chr6:7478794 Bda11g01026 Bda-Chr11:10001285 4.53E-97 dispersed
Bda15g00624 Bda-Chr15:9395060 Bda06g00521 Bda-Chr6:7478794 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00521 K07466 - mnt:21390529 937.176