Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00521 ATGGCGAAGACTGCGACACCAGGTGGAATTTTGAAGATTCAGGCTGATCCAACGCCGGAATTGTCCTCGGAAGTCTCGGATTTAGTGCTTCAGGTCCTCGATCTTAAAGCCACGGGGAATCGTTACATGTTTACTGCCAGCGATGGAACTATGAAGTTGAAAGCTATTCTACCGTCGAATCTCTCTTCCGAGGTGATCTCAGGGAAGATTCAGAATCTAGGTCTTATTCGCATTCTTGATTATTCCCTCAATGACATCCCAAACAAGTCGGAGAAGTATATGATTGTGACTAAATGCGAGGTTGTTTCTCCTGCTCTTGAAATGGAGATTAAGAACGTAGCCAAAAGTGAGGAATCTGAATTGTTTCTGACACCAAAACGAGAAAATGACTGTGAGAGTGAAGTGAATGGAGAAAAACCAGGGATTCTTCTAAAGCCAAAGCCTGAAATGTTTGCAAAATCAGCAGCTCAAATTGTAAACGAACAAAAATCAAACTTGGCCCCAACTGCACGAATGGCCATGACAAGGAGAGTTCATCCTCTTCTTTCATTGAATCCCTACCAAGGCAATTGGACAATTAAAGTTCGTGTTACGAATAAGGAAGCTATGCGTTATTACAAGAATGCCAGGGGAGAAGGATGTGTCTTCAATGTCGAATTAACTGATGATGATGAAACCCAAATACAGGCAACAATGTTCAATGAGGCTGCTAGAAAGTTTTATGATAAATTTGAGCTTGGAAAGGTTTATTACATTTCAAAGGGAACTCTAAAGGTTGCTAACAAGAAATTCAGTACCGTGAAAAATGATTATGAAATGACTTTGAATGAGAATTCAGAGGTGGAAGAGGCCATCAACGAAGCTACTTTTGTGCCTGTGACGAAATTCAATTTTGTCCCAATTGATATGTTGGGTCCTTATGTGAATGGAAAAGAACTTGTTGATGTTATTGGAGTGGTTCAGAATGTTTCCCCTACAATCAGTATTCGAAGGAAGATCAGTAATGAAACTGCTCCGAAGCGTGACATAACTATTGCTGATGAGACGAAAAAAACAGTTGTAGTCTCACTATGGAATGAGCTCGCAACTAATGTGGGGCAGGAGTTACTCGACATGGTGGATCAATCGCCCGTAATTGCAATTAAATCTCTTAAAGTTGGAGATTTTCAAGGTGTATCTCTTTCATCAGTGAGTAAAAGCAAATTGCTAGTAAATCCAGGCACACCTGAGGCAAAAAAGTTAAAATTATGGTTTGATTCTGAAGGCAAAGGAACATCGATGGCGTCTGTTGGCTCTAGTTTGAGCCCATCATCCAAGAATGGAGGAAGGTCCATGTATTCTGACCGGACATCTTTGTCTTACATAATCCAAAACCCGTCATTAGGGGATGATAAGCCGATGTTCTTCAGCATTAGAGCATATATTAGCTCCATCAAACCTGATCAGACTATGTGGTACCGAGCTTGCAAGACTTGCAACAAGAAGGTGACTGATGCTATAGGTTCTGGATTTTGGTGTGAAGGTTGCCAGAAAAGTGATGGAGAATGCAGTTTAAGATACATAATGGTCGTTAGAATTTCTGATGCCAGCGGCGAAGTCTATCTCTCTCTTTTCAATGACGAGGCAGAAAAAATCATTGGATGCACAGCTGATGAGCTTGACAAAATGAAATCACAAATTGCTGAAGAGAATTCATATGAGACGAAATTGAAGGAGGCTACTTGGGTTCCTTATCTATTTAGAGTAAGCGTTTCTCAGAATGAATACAACAATGAGAAGAGGCAGAGGATTACTGCCAGAGCTGTTGCTCCTGTCGATTTTGCTTCTGAATCCAAACTTTTGCTTGAAGAAATTTCGAGTTCAAGAATTTCAAAATGA 1878 40.58 MAKTATPGGILKIQADPTPELSSEVSDLVLQVLDLKATGNRYMFTASDGTMKLKAILPSNLSSEVISGKIQNLGLIRILDYSLNDIPNKSEKYMIVTKCEVVSPALEMEIKNVAKSEESELFLTPKRENDCESEVNGEKPGILLKPKPEMFAKSAAQIVNEQKSNLAPTARMAMTRRVHPLLSLNPYQGNWTIKVRVTNKEAMRYYKNARGEGCVFNVELTDDDETQIQATMFNEAARKFYDKFELGKVYYISKGTLKVANKKFSTVKNDYEMTLNENSEVEEAINEATFVPVTKFNFVPIDMLGPYVNGKELVDVIGVVQNVSPTISIRRKISNETAPKRDITIADETKKTVVVSLWNELATNVGQELLDMVDQSPVIAIKSLKVGDFQGVSLSSVSKSKLLVNPGTPEAKKLKLWFDSEGKGTSMASVGSSLSPSSKNGGRSMYSDRTSLSYIIQNPSLGDDKPMFFSIRAYISSIKPDQTMWYRACKTCNKKVTDAIGSGFWCEGCQKSDGECSLRYIMVVRISDASGEVYLSLFNDEAEKIIGCTADELDKMKSQIAEENSYETKLKEATWVPYLFRVSVSQNEYNNEKRQRITARAVAPVDFASESKLLLEEISSSRISK 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7478794 7481976 - Bda023776.1 Bda06g00521 8103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00521 625 Gene3D - 432 620 IPR012340 -
Bda06g00521 625 SUPERFAMILY Nucleic acid-binding proteins 2 108 IPR012340 -
Bda06g00521 625 SUPERFAMILY Nucleic acid-binding proteins 447 620 IPR012340 -
Bda06g00521 625 CDD RPA1_DBD_A 180 283 - -
Bda06g00521 625 CDD RPA1_DBD_C 463 620 IPR013955 -
Bda06g00521 625 SUPERFAMILY Nucleic acid-binding proteins 178 288 IPR012340 -
Bda06g00521 625 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bda06g00521 625 CDD RPA1_DBD_B 313 419 - -
Bda06g00521 625 MobiDBLite consensus disorder prediction 424 444 - -
Bda06g00521 625 Pfam OB-fold nucleic acid binding domain 191 277 IPR004365 GO:0003676
Bda06g00521 625 Gene3D - 6 114 IPR012340 -
Bda06g00521 625 MobiDBLite consensus disorder prediction 425 444 - -
Bda06g00521 625 Pfam Replication factor-A C terminal domain 468 614 IPR013955 -
Bda06g00521 625 Gene3D - 291 431 IPR012340 -
Bda06g00521 625 PANTHER REPLICATION FACTOR A 1, RFA1 5 619 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bda06g00521 625 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 619 - -
Bda06g00521 625 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 5 619 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bda06g00521 625 Pfam Replication protein A OB domain 309 405 IPR031657 -
Bda06g00521 625 Gene3D - 177 286 IPR012340 -
Bda06g00521 625 SUPERFAMILY Nucleic acid-binding proteins 296 423 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00521 K07466 RFA1, RPA1, rpa; replication factor A1 - mnt:21390529 937.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00521 Bda-Chr6:7478794 Bda11g01026 Bda-Chr11:10001285 4.53E-97 dispersed
Bda15g00624 Bda-Chr15:9395060 Bda06g00521 Bda-Chr6:7478794 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g667 . . Bda06g00521 . Bpe12g00524 . . Bma12g00964 . . . . . Car11g00189 Sed08g0277 . Cpe04g01458 Bhi02g00093 Tan09g2042 Cmetu02g0517 . Hepe09g0275 . . Cla06g01537 Cam06g1696 Cec06g1758 Cco06g1757 Clacu06g1663 Cmu06g1609 Cre06g2422 . . . . . . . . . Blo15g00339 . . Bpe07g00755 . . Bma08g00242 . . Cmo11g00212 . . . . . . . . . . . . . . . . . . . . Lsi06g01410 Csa01g00297 Chy02g02440 Cme02g01827
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda08g01342 . 7 358 Core DNA Replication Machinery Family AT2G37560 67.6 8.8e-140 493.4
Bda04g00178 . 7 278 Core DNA Replication Machinery Family AT2G37560 54.2 8.3e-98 354.0
Bda01g01840 . 1 402 Core DNA Replication Machinery Family AT2G01120 61.3 6.6e-137 484.2
Bda08g00143 . 4 537 Core DNA Replication Machinery Family AT4G29910 58.7 5.8e-181 630.9
Bda01g02162 . 1 264 Core DNA Replication Machinery Family AT1G26840 68.9 7.9e-94 340.5
Bda06g00243 . 1 795 Core DNA Replication Machinery Family AT1G79150 55.0 1.4e-223 773.1
Bda09g00338 . 1 955 Core DNA Replication Machinery Family AT1G44900 75.0 0.0e+00 1360.1
Bda02g00085 . 1 500 Core DNA Replication Machinery Family AT5G46280 69.1 8.6e-217 750.0
Bda14g00572 BCT 6 734 Core DNA Replication Machinery Family AT2G16440 73.2 3.3e-313 1070.8
Bda09g00764 . 1 873 Core DNA Replication Machinery Family AT5G44635 68.5 0.0e+00 1135.2
Bda10g00656 . 1 585 Core DNA Replication Machinery Family AT4G02060 82.6 3.9e-283 970.7
Bda02g00849 . 1 399 Core DNA Replication Machinery Family AT2G29680 63.4 3.6e-142 501.9
Bda02g00849 . 1 369 Core DNA Replication Machinery Family AT1G07270 63.4 6.6e-130 461.1
Bda10g00488 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.4 8.9e-257 882.9
Bda10g00495 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.9 9.9e-256 879.4
Bda04g00428 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.2 8.6e-252 866.3
Bda05g01111 . 1 469 Core DNA Replication Machinery Family AT3G25100 77.6 1.8e-193 672.5
Bda03g01734 . 7 215 Core DNA Replication Machinery Family AT3G09660 79.4 8.7e-90 328.6
Bda05g00009 . 7 632 Core DNA Replication Machinery Family AT2G14050 76.7 3.3e-281 964.1
Bda08g00993 . 6 395 Core DNA Replication Machinery Family AT2G20980 54.0 8.9e-112 400.6
Bda10g00977 . 1 955 Core DNA Replication Machinery Family AT1G77320 50.5 3.9e-257 884.8
Bda04g00667 . 529 624 Core DNA Replication Machinery Family AT4G02110 74.0 1.0e-41 169.5
Bda12g00659 . 1 191 Core DNA Replication Machinery Family AT1G80190 68.6 9.9e-75 276.6
Bda06g00222 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 4.3e-59 224.2
Bda09g00567 . 1 145 Core DNA Replication Machinery Family AT3G12530 70.3 1.3e-58 222.6
Bda09g00575 . 1 145 Core DNA Replication Machinery Family AT3G12530 70.3 1.3e-58 222.6
Bda08g00710 . 1 145 Core DNA Replication Machinery Family AT3G12530 70.3 2.1e-58 221.9
Bda11g01457 . 1 145 Core DNA Replication Machinery Family AT3G12530 68.3 2.6e-56 214.9
Bda15g00318 . 1 182 Core DNA Replication Machinery Family AT1G19080 67.6 6.8e-70 260.4
Bda15g00318 . 1 182 Core DNA Replication Machinery Family AT3G55490 67.6 6.8e-70 260.4
Bda13g00221 . 15 164 Core DNA Replication Machinery Family AT5G49010 68.0 3.5e-53 204.9
Bda14g01239 . 1 1546 Core DNA Replication Machinery Family AT5G67100 59.0 0.0e+00 1732.2
Bda14g01247 . 1 597 Core DNA Replication Machinery Family AT5G67100 66.3 3.1e-237 819.3
Bda10g00962 . 2 664 Core DNA Replication Machinery Family AT1G67630 53.0 2.0e-198 689.1
Bda08g00182 . 1 448 Core DNA Replication Machinery Family AT1G67320 65.6 6.1e-187 650.6
Bda08g00470 . 1 418 Core DNA Replication Machinery Family AT5G41880 61.1 2.5e-163 572.0
Bda04g00382 . 27 1166 Core DNA Replication Machinery Family AT5G63960 77.1 0.0e+00 1753.4
Bda05g01086 . 4 440 Core DNA Replication Machinery Family AT2G42120 75.6 1.6e-199 692.2
Bda08g00182 . 1 448 Core DNA Replication Machinery Family AT1G67320 65.6 6.1e-187 650.6
Bda02g00714 . 2 2110 Core DNA Replication Machinery Family AT1G08260 68.8 0.0e+00 2882.4
Bda02g00714 . 9 2217 Core DNA Replication Machinery Family AT2G27120 65.9 0.0e+00 2858.2
Bda06g00861 . 2 202 Core DNA Replication Machinery Family AT5G22110 77.6 1.5e-92 337.0
Bda09g01383 . 1 826 Core DNA Replication Machinery Family AT5G22010 62.4 8.5e-267 916.8
Bda08g00530 . 3 331 Core DNA Replication Machinery Family AT1G63160 89.7 1.2e-170 595.9
Bda11g00726 BCT 1 355 Core DNA Replication Machinery Family AT5G27740 85.1 7.1e-177 616.7
Bda03g00016 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.8 1.9e-152 535.4
Bda13g01478 BCT 1 362 Core DNA Replication Machinery Family AT1G77470 78.1 3.1e-159 558.1
Bda01g01451 . 14 187 Core DNA Replication Machinery Family AT1G77470 51.6 5.5e-39 158.7
Bda11g01026 . 26 612 Core DNA Replication Machinery Family AT2G06510 68.8 2.2e-250 861.7
Bda06g00521 . 1 625 Core DNA Replication Machinery Family AT5G08020 66.9 2.6e-243 838.2
Bda15g00624 . 1 626 Core DNA Replication Machinery Family AT5G08020 67.0 4.8e-242 833.9
Bda06g00521 . 1 620 Core DNA Replication Machinery Family AT5G61000 66.5 8.5e-242 833.2
Bda15g00624 . 1 620 Core DNA Replication Machinery Family AT5G61000 66.2 1.6e-240 828.9
Bda01g01616 . 1 361 Core DNA Replication Machinery Family AT5G26680 85.0 4.0e-179 624.4
Bda13g00449 . 17 133 Core DNA Replication Machinery Family AT1G08840 70.1 1.6e-43 175.3
Bda13g00451 . 17 133 Core DNA Replication Machinery Family AT1G08840 70.1 2.1e-43 174.9
Bda15g00131 . 1 299 Core DNA Replication Machinery Family AT2G25100 68.2 5.5e-116 414.1
Bda09g01436 . 46 765 Core DNA Replication Machinery Family AT1G08130 61.9 8.2e-258 886.7
Bda09g01436 . 223 765 Core DNA Replication Machinery Family AT1G49250 66.3 3.9e-205 711.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007473 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00521 Bda_Chr06 FPKM 5.567966 5.096056 2.052232 2.062217 1.494507 1.628626 1.53292 4.946743 5.1195