Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00525 ATGGCTTCTCATGGCTCGAGTTCTAGTAAAGACCCGGATATCAAGTTCAATCAGTTCTTTCTATGGAATGAGTTTCTGTGGGGCGCAGTTGCTGGTGCTTTTGGGGAAGGAATGATGCATCCTGTGGACACTCTGAAGACTCGTGTTCAAAGTCAAGCAATTCTTTTTGGAAGTCAGAATCAAAAGAGCATGCTGAAAATGGTCCAGTCAATCTGGAAAACAGATGGAGTGAGAGGCTTTTACAGGGGGATTGCTCCTGGAGTTACAGGTTCTCTTGCCACTGGAGCTACATATTTTGGTCTTATAGAGTCCTCTAAAAAGTGGACAGAAGAATCTCTTCCTAGCCTTAGTCCTCACTGGGCACATTTCATTGCAGGAGCAATGGGAGATACACTTGGTTCATTTATATACGTTCCATGCGAAGTGATTAAGTTGCGCATGCAAGTTCAAGGTGGAAGGACTTCTTGGAGTTCAGCTGTAAATAAGGGCGGCATTTCTAAGAAGCATGGTGTACAGATGTATGGTTATTATACGGGAATGTTACAAGCTGGTTGTTCAATATGGAAGGAGCAAGGGGTGAAAGGATTATTTGCTGGATATTGGTCCACCCTTGCGAGAGATGTGCCATTTGCTGGTTTAATGGTAATGTCTTATGAATCACTAAAAGATTTAACACAGCATGCGAAGCAAACTTGGTCACCCTATTCGCATGACAATGGCAACAGTTCCTTAGAAGGACTAATTCTAGGGGGATTGGCCGGAGGTTTGAGCGCATATCTCACTACTCCCTTGGACGTCATCAAAACTAGATTGCAAGTTCAAGGATCAACATTAAGGTACAAAGGCTGGTTAGACGTGATGCGTATTATATGGAGGAAGGAAGGTTTGAAGGGTATGTTTAGAGGTAGCATCCCAAGAGTTACATGGTATATGCCAGCTTCTGCACTTACATTCATGGCCGTCGAGTTTCTGAGAGATCATTTCAACCAAGTATCGGACAATGGGTCTTTGCCCGAAGTTTCGCCGTTATCTTCGGTTGTGGAGAAGGGGTCTCTGCAAAAGGTGAGCTGA 1071 44.16 MASHGSSSSKDPDIKFNQFFLWNEFLWGAVAGAFGEGMMHPVDTLKTRVQSQAILFGSQNQKSMLKMVQSIWKTDGVRGFYRGIAPGVTGSLATGATYFGLIESSKKWTEESLPSLSPHWAHFIAGAMGDTLGSFIYVPCEVIKLRMQVQGGRTSWSSAVNKGGISKKHGVQMYGYYTGMLQAGCSIWKEQGVKGLFAGYWSTLARDVPFAGLMVMSYESLKDLTQHAKQTWSPYSHDNGNSSLEGLILGGLAGGLSAYLTTPLDVIKTRLQVQGSTLRYKGWLDVMRIIWRKEGLKGMFRGSIPRVTWYMPASALTFMAVEFLRDHFNQVSDNGSLPEVSPLSSVVEKGSLQKVS 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7495859 7499536 + Bda023780.1 Bda06g00525 8107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00525 356 ProSiteProfiles Solute carrier (Solcar) repeat profile. 241 327 IPR018108 -
Bda06g00525 356 Pfam Mitochondrial carrier protein 118 227 IPR018108 -
Bda06g00525 356 Pfam Mitochondrial carrier protein 20 109 IPR018108 -
Bda06g00525 356 Pfam Mitochondrial carrier protein 244 330 IPR018108 -
Bda06g00525 356 ProSiteProfiles Solute carrier (Solcar) repeat profile. 19 108 IPR018108 -
Bda06g00525 356 Gene3D Mitochondrial carrier domain 5 170 IPR023395 -
Bda06g00525 356 Gene3D Mitochondrial carrier domain 171 348 IPR023395 -
Bda06g00525 356 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 14 344 - -
Bda06g00525 356 ProSiteProfiles Solute carrier (Solcar) repeat profile. 117 224 IPR018108 -
Bda06g00525 356 SUPERFAMILY Mitochondrial carrier 21 324 IPR023395 -
Bda06g00525 356 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 14 344 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00525 - - - csv:101208060 508.064
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01390 Bda-Chr1:49781569 Bda06g00525 Bda-Chr6:7495859 2.26E-33 dispersed
Bda01g01433 Bda-Chr1:50270404 Bda06g00525 Bda-Chr6:7495859 2.06E-33 dispersed
Bda06g00525 Bda-Chr6:7495859 Bda11g01343 Bda-Chr11:14881722 1.07E-08 dispersed
Bda06g00525 Bda-Chr6:7495859 Bda13g01526 Bda-Chr13:38311150 2.06E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g653 . . Bda06g00525 . . . . Bma12g00968 . . . . . Car11g00182 . . Cpe04g01464 Bhi02g00689 . . . . . . Cla06g01542 Cam06g1702 Cec06g1764 Cco06g1763 Clacu06g1669 Cmu06g1615 Cre06g2428 . . . . . . . . . Blo15g00333 . . Bpe07g00758 . . . . . Cmo11g00207 . . . . . Cpe18g00704 . . . . . . . . . . . . . . Lsi06g01417 Csa01g00290 Chy02g02445 Cme02g01833
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009832 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 0 2 1 1 1 0 1 1 1 1 5 0 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00525 Bda_Chr06 FPKM 5.727215 7.770835 0.0 0.0 0.0 0.216304 0.0 0.0 0.0