Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00526 ATGGCTGTTTTAGCTTCTCTGTTCCTCTTTCTAGCCATGTCTGGCCATTCAACTGCAACTTGGTGCGTTTGCAGAGATGGAGTAAGTGATTCAGTTCTGCAAAATACATTAGACTATGCCTGTGGAGCTGGAGCAGATTGTGGCCCAATTCGTCAAAATGGAGTTTGTTTTCAGCCAAACACAGTCAAAGCTCACTGTTCTTACGCTGTCAACAGCTACTTCCAGAGGAAAGGCCAAGCTCAAGGCTCCTGCGATTTTGCTGCTTCTGCCATTACCATAACTTCTAACCCTAGCATTACCGGTTGTGTTTACCCTAGTTCCAGCACCGGAGCAACACCGTCGACAAACACTACACCGATTACAACAACAAATCCTTACACGGGGACATCAACCGGAATTCTTGGAGTGGGTTCTGGACCGTCGAGCTCTATTGGAGCTGGCATTAATTCGGATGACAGCCACGGCGAAACGAAGCTTCTACGCGAAACTATGCAGCTCAGTTTCTCAACGGCCCTTTTTTTGTTCTACGTCTTGGTTTGA 540 47.22 MAVLASLFLFLAMSGHSTATWCVCRDGVSDSVLQNTLDYACGAGADCGPIRQNGVCFQPNTVKAHCSYAVNSYFQRKGQAQGSCDFAASAITITSNPSITGCVYPSSSTGATPSTNTTPITTTNPYTGTSTGILGVGSGPSSSIGAGINSDDSHGETKLLRETMQLSFSTALFLFYVLV 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7511661 7513612 - Bda023782.1 Bda06g00526 8108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00526 179 PANTHER BETA-1,3 GLUCANASE 1 110 IPR044788 -
Bda06g00526 179 PANTHER PLASMODESMATA CALLOSE-BINDING PROTEIN 3-LIKE ISOFORM X1 1 110 - -
Bda06g00526 179 SMART X8_cls 20 104 IPR012946 -
Bda06g00526 179 Pfam X8 domain 20 90 IPR012946 -
Bda06g00526 179 Gene3D - 15 117 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00526 - - - jre:108982890 193.741
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00526 Bda14g00876 CCT
Bda06g00526 Bda11g01721 CCT
Bda06g00526 Bda14g00876 ECH
Bda06g00526 Bda11g01721 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01126 Bda-Chr3:11813173 Bda06g00526 Bda-Chr6:7511661 5.59E-30 dispersed
Bda06g00526 Bda-Chr6:7511661 Bda14g00876 Bda-Chr14:6792007 9.71E-59 dispersed
Bda09g00572 Bda-Chr9:8008460 Bda06g00526 Bda-Chr6:7511661 3.12E-24 transposed
Bda11g01721 Bda-Chr11:51677149 Bda06g00526 Bda-Chr6:7511661 1.30E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g649 . Blo16g00170 Bda06g00526 . . Bpe13g00310 . Bma12g00970 . . . . . Car11g00180 Sed12g1997 . Cpe04g01466 Bhi02g00692 Tan09g2050 Cmetu02g1984 . . . . Cla06g01545 Cam06g1705 Cec06g1766 Cco06g1766 Clacu06g1672 Cmu06g1618 Cre06g2431 Cone2ag0806 Cone16ag0202 Cone13ag0038 . Lsi02g00116 Csa01g00594 Chy12g01504 Cme12g01948 . . Bda11g01721 Bda14g00876 Bpe07g00760 . Bma03g00848 . . . Cmo11g00205 . . . Car18g00006 . Cpe18g00701 Bhi08g01093 . . Lac10g0143 . . . Cla04g01158 Cam04g1217 Cec01g1728 Cco01g1773 Clacu04g1244 Cmu04g1223 Cre01g1519 Lsi06g01420 Csa01g00286 Chy02g02449 Cme02g01836
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000407 3 5 2 5 4 4 7 5 3 3 3 4 5 4 3 6 4 7 7 4 4 4 3 3 3 4 4 4 5 2 124
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00526 Bda_Chr06 FPKM 22.32472 23.050657 138.714478 140.171661 28.875273 27.154747 26.851385 102.807625 99.70002