Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00528 ATGGGTAGTGAAAACCTGAAGACATGGGTATCCGACAAGCTCATTTCAATGCTGGGATATTCTCAACCAACAATCGTCCAATACATTATTGGATTAACCAAACAAGCAACATCACCTACTGATGTTGCAGAAAAGCTGGAAGAAGTTGGATTATCATCCACCAGCGAAACGCAAGCTTTTGCTGAGGAAATATTTTCAAGAGTGCCACATAAATCATCTGGTTTAAATCATTATCAAAAGCAAGAGAGGGAAGCTGCTATGTTGGTGAGAAAGCAGAAATCTTACACAATATTGGATGCTGATGACGATGAGGATGAAGTAAATGGTATAGGAGGCGGCAGTACTAAAACTTCTCTCTCTGTAGCTTCTGACAGTTCAAAAGTAGATAGACACACGAAACGATTCAGAAAGAAAACTGAAAGTCAAGATGATGATGATGAGGCACTGTGCTTTTTTGAAATTTTGCTCACGGATCCCATACACACACGCACAACCACTTCGACAATCTCACAGTCACTCACATATAGATCATGTTTAATTGGTTTGCAGTCGTCAGAAGAAGAAAGACTACGGGATCAAAGGGAGAGGGAGAAGCTTGAGCGCAATATTAGAGAACGTGATGCAGTTGGGACACGGAAGTTGACAGAGTCAAAGTTAACTCGAAGGGAGGAAGAAGAGGCAATCCGGAGATCAAATGCGTTCGAGCAAAATGAACTTGAAACTTTAAGGAAAGTTTCAAGACAAGAGTATTTAAAAAAAAGGGAGCAAAAGAAACTCGATGAAATTAGAGATGACATTGAAGATGAGCAATATTTGTTTGAAGGTGTAAAGCTCACTGATGCAGAATACCGTGAGTTAAGGTACAAAAAGGAAATTTATGAGTTTGTGAAGAAACGATCAGAGGAAGTTGACAACAGCACTGAGTACAGGATGCCAGATGCATATGACCTAGATGGTAGAATTAATCAGGAGAAGAGATTTTCTGTAGCTGTGCAGCGTTATAGGGATCCAAGTGCTGTGGAGAAAATGAATCCATTTGCAGAACAAGAGGCTTGGGAGGAACATCAAATTTCGAAAGCAAACTTGAAATTTGCTTCCAAAAGTAAAAAGCCACTCTCTGATGATTATCAGTTTGTTTTTGAAGACCAGATTGAGTTCATCAAGGCATCAGTAATGGAAGGCGATGAGTTTTCTGAACAACCAACCGAGTTACTTGAAAAGTTAGCGGCAAAATCAGCTCTGGAGAAACTTCAGGAGGATAGGAAAACTTTACCAATATACCCATATCGTGAAGAATTGCTCCAAGCTGTTAACGATCATCAGGTTCTTGTTATTGTGGGTGAAACTGGTTCAGGAAAGACTACGCAAATACCCCAATATCTTCATGAAGCTGGGTATACCAAACGTGGACAGATTGGATGTACCCAACCACGTCGAGTTGCTGCTATGAGTGTTGCTGCCAGAGTTTCTCAAGAAATGGGTGTCAAACTTGGGCATGAGGTTGGTTATTCCATTCGTTTCGAGGATTGCACATCAGAGAAAACTGTCTTAAAATATATGACAGATGGGATGCTGTTACGAGAATTCTTGGGTGAGCCTGATCTTGCAAGCTACAGTGTGGTTATGGTGGATGAGGCTCATGAAAGAACCCTGTCAACTGACATTCTATTTGGTCTAGTTAAGGATATATCACGATTTCGGCCTGATCTTAAATTGTTGATTTCAAGTGCAACACTTGACGCTGAGAAATTTAGTGACTACTTTGACTCTGCTCCAATATTCAAAATTCCTGGAAGGCGGTATCCAGTGGAAATAAACTTTACGAAAGCGCCTGAAGCAGATTACTTAGATGCAGCAATAGTGACTGCTCTTCAGATTCATGTAACACAATCTCCCGGAGATATATTAGTGTTCCTCACTGGTCAAGAAGAAATTGAAACAGCAGAAGAAATTTTGAAGCACAGAACAAGGGGTCTTGGTACAAAGATAGCAGAGCTAATCATCTGCCCTATATATGCCAACCTACCAACAGAGCTGCAAGCTAAGATTTTTGAGCCTACTCCAGAAGGGGCAAGGAAGGTTGTTTTAGCAACTAATATAGCAGAGACATCTTTGACGATTGATGGGATCAAATATGTTATTGACCCTGGTTTTTGCAAGATGAAAACCTATAATCCTAGGACGGGGATGGAATCTCTGCTAATTGCTCCCATTTCTAAAGCATCAGCAAATCAGAGGGCAGGCCGATCAGGACGAACAGGGCCTGGAAAGTGCTTCCGTCTGTATACTGCCAACAATTACTACACTGATCTGGATGACAACACCGTGCCAGAAATACAGCGGACAAACCTCGCAAATGTTGTATTAACTCTCAAGAGTCTTGGAATTCACGACCTATTAAATTTTGATTTTATGGATCCACCACCATCTGAAGCATTAATAAAATCCCTAGAACTACTTTTTGCACTCAGTGCTTTAAATAGTCTTGGTGAATTGACTAAAATGGGCAGGCGAATGGCTGAGTTTCCTCTTGATCCCATGCTGTCAAAAGTGATTGTCGCTTCTGACAAGTATAAGTGTTCAGATGAGATCATTTCCATTGCTGCTATGCTTTCTATTGGAAATTCAATATTTTATCGTCCAAAAGATAAACAAGTTCATGCCGATAATGCAAGAATGAATTTTCATGCTGGAAATGTTGGAGACCATATTGCCCTACTTAAGGTCTATAACTCTTGGAAAGAAACGAACTTCTCAACGCAGTGGTGTTATGAGAATTACATTCAGGTTAGGAGTATCAAGCGTGCTCGGGACATTAGAGATCAACTTGAGGGGCTCTTAGAAAGAGTTGAGATTGAGCTCACTTCAAATTCCGGTGATCTAGAGGCTATAAAGAAGGCCATAACATCGGGATTCTTCCCTCATTGTGGGCGGCTACAGAAGAATGGATCTTACCGCACAGTGAAATTCCCACAAACTGTTCATATACATCCAAGCTCAGGGCTGGCACAGGTGCTTCCAAGATGGGTCGTGTACCATGAATTGGTTCTCACATCGAAAGAATATATGAGACAGGTAACAGAACTGAAGCCTGAATGGTTGATTGAAATAGCTCCTCATTACTACCAAATGAAGGACGTGGAAGACTCGGCTTCTAAGAAAATGCCTCGTGGAGAAGGTCGCACTTCGAATGACTTGCAGCACATTAACGGGTGA 3216 41.23 MGSENLKTWVSDKLISMLGYSQPTIVQYIIGLTKQATSPTDVAEKLEEVGLSSTSETQAFAEEIFSRVPHKSSGLNHYQKQEREAAMLVRKQKSYTILDADDDEDEVNGIGGGSTKTSLSVASDSSKVDRHTKRFRKKTESQDDDDEALCFFEILLTDPIHTRTTTSTISQSLTYRSCLIGLQSSEEERLRDQREREKLERNIRERDAVGTRKLTESKLTRREEEEAIRRSNAFEQNELETLRKVSRQEYLKKREQKKLDEIRDDIEDEQYLFEGVKLTDAEYRELRYKKEIYEFVKKRSEEVDNSTEYRMPDAYDLDGRINQEKRFSVAVQRYRDPSAVEKMNPFAEQEAWEEHQISKANLKFASKSKKPLSDDYQFVFEDQIEFIKASVMEGDEFSEQPTELLEKLAAKSALEKLQEDRKTLPIYPYREELLQAVNDHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGQIGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADYLDAAIVTALQIHVTQSPGDILVFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKTYNPRTGMESLLIAPISKASANQRAGRSGRTGPGKCFRLYTANNYYTDLDDNTVPEIQRTNLANVVLTLKSLGIHDLLNFDFMDPPPSEALIKSLELLFALSALNSLGELTKMGRRMAEFPLDPMLSKVIVASDKYKCSDEIISIAAMLSIGNSIFYRPKDKQVHADNARMNFHAGNVGDHIALLKVYNSWKETNFSTQWCYENYIQVRSIKRARDIRDQLEGLLERVEIELTSNSGDLEAIKKAITSGFFPHCGRLQKNGSYRTVKFPQTVHIHPSSGLAQVLPRWVVYHELVLTSKEYMRQVTELKPEWLIEIAPHYYQMKDVEDSASKKMPRGEGRTSNDLQHING 1071
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7533388 7549308 - Bda023784.1 Bda06g00528 8110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00528 1071 Gene3D - 600 775 IPR027417 -
Bda06g00528 1071 CDD SF2_C_RHA 601 762 - -
Bda06g00528 1071 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 964 1041 IPR011709 -
Bda06g00528 1071 Coils Coil 182 202 - -
Bda06g00528 1071 MobiDBLite consensus disorder prediction 1048 1071 - -
Bda06g00528 1071 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 620 795 IPR001650 -
Bda06g00528 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 418 947 IPR027417 -
Bda06g00528 1071 SMART ha2_5 815 907 IPR007502 GO:0004386
Bda06g00528 1071 Pfam Helicase associated domain (HA2) 816 890 IPR007502 GO:0004386
Bda06g00528 1071 SMART ultradead3 422 606 IPR014001 -
Bda06g00528 1071 Gene3D - 799 958 - -
Bda06g00528 1071 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 539 548 IPR002464 -
Bda06g00528 1071 Coils Coil 252 272 - -
Bda06g00528 1071 PANTHER ATP-DEPENDENT RNA HELICASE 106 1062 - -
Bda06g00528 1071 MobiDBLite consensus disorder prediction 111 125 - -
Bda06g00528 1071 PANTHER OS05G0389800 PROTEIN 106 1062 - -
Bda06g00528 1071 SMART helicmild6 646 754 IPR001650 -
Bda06g00528 1071 MobiDBLite consensus disorder prediction 106 125 - -
Bda06g00528 1071 Coils Coil 933 953 - -
Bda06g00528 1071 Gene3D - 378 599 IPR027417 -
Bda06g00528 1071 Pfam Helicase conserved C-terminal domain 626 754 IPR001650 -
Bda06g00528 1071 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 434 597 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00528 K12813 DHX16; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:3.6.4.13] - jre:108990957 1747.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00528 Bda-Chr6:7533388 Bda12g00392 Bda-Chr12:4659941 0 dispersed
Bda10g00669 Bda-Chr10:40806040 Bda06g00528 Bda-Chr6:7533388 2.02E-175 dispersed
Bda06g00528 Bda-Chr6:7533388 Bda04g00692 Bda-Chr4:55733424 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g625 . . Bda06g00528 . . . . Bma12g00972 . . . . . Car11g00178 . . Cpe04g01469 Bhi02g00257 . . . . . . . . . . . . . . . . . . . . . . Blo15g00330 . . Bpe07g00762 . . . . . Cmo11g00202 . . . . Cpe09g01050 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005975 1 6 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00528 Bda_Chr06 FPKM 0.226614 0.0 0.0 0.0 0.1126 0.0 0.574821 0.0 0.0