Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00530 ATGTTTCATCACCAACCTTCCTCGTCCTATTTTTATCATGTTTCTCCCTCATTCACTGCGAATCCAGCTCCACTCACGTCGTGTTCTCAGCCTGCGGTGCCGTCCGTCGTTACCTTACTGCCTGCGGTTAATCAGCCTGGTACCGACCCATATGCTGCCAATTTGGGGTCCTACCCGTCGACCCATGTAGGATATGAAGGTCAAACGCAAGTTTTTCAGGACCCAAATGCACGCTCTTATACTGGGATCGTTGAACAAGCTGACCCCAGAAATTATGAATGTGCAATACCTTCTCAAGAGTACCAAGTAACACCTACAAGTTTAACTTCTTCGTTGAATAGCAATCAGAATGGTCAATCTATTGTAAATCATACTGCAAGGATTCCGTATGGAACAAATTTTAATCAATCGATACGGTGTGAGGTTTGCAAAATTGATTGCACCAGCAGAGATGTTTATGAAAAACACATACGGGGAAAGAAGCACAAAAATAAATTGAAATTGCGTGATTATTCCTTGAATACAGTGTTACCAAAAACTGCTCATGCCTTCAATGACATCAATATTTCTACTGAAATCAAAACTATCCATGGACAAATGGCACCTATGCTTTCATTTGTTACCGCCGGTGAGGATTTGGAGAAGAAAAAACAAAAGGTTTTAACTGGTGGTGCAGCAGTCGAATCCGTGAGAGTTTGCAGAATATGCGACGTCGTGTGTAATAGTCAAGATGTATTCATGAAACATCTGGTCGGGAAAAAGCACTCCGCTCTGGCTCACTTGATGGCTCAAAATCCCTTCGTAGCTGCAGTTCGGTCGCATTACGATAGCACTCAGAAGAAAATACCAAAACCGACAAAAATCATTCAGTCCGCATGGTGTGAAGTGTGTAAAATCAACTGCAACAGCAATGATGTCTACGTCAAACATCTATCAGGAAAAAAACATTTGAAGAATGTCGAAAAATCAAGCAACCCCTCCATGCCAATTCGAGTGATTGGGCCAGTGGAGAATCCAGCTGCAAATAAACCTAAAAATAGCGGTCTGGAAAACTCGTGCAAACCATCAGCTCAGTCTGGTATGCCAGAAGATCTCGAGTCGAAGAAGAGGAAAGTTTTGGAGGCTGGAGCAGCTGCTGGAGCTGTTAAGGTATGCACCATGTGTAATGTGATTTGTAATAGTGAGATTGTTCTCAATTTTCATCTATCTGGCCAAAAACATGCCAATATGATGAAGAAACAGCAAGAAGGTAGTTCTTAG 1260 42.38 MFHHQPSSSYFYHVSPSFTANPAPLTSCSQPAVPSVVTLLPAVNQPGTDPYAANLGSYPSTHVGYEGQTQVFQDPNARSYTGIVEQADPRNYECAIPSQEYQVTPTSLTSSLNSNQNGQSIVNHTARIPYGTNFNQSIRCEVCKIDCTSRDVYEKHIRGKKHKNKLKLRDYSLNTVLPKTAHAFNDINISTEIKTIHGQMAPMLSFVTAGEDLEKKKQKVLTGGAAVESVRVCRICDVVCNSQDVFMKHLVGKKHSALAHLMAQNPFVAAVRSHYDSTQKKIPKPTKIIQSAWCEVCKINCNSNDVYVKHLSGKKHLKNVEKSSNPSMPIRVIGPVENPAANKPKNSGLENSCKPSAQSGMPEDLESKKRKVLEAGAAAGAVKVCTMCNVICNSEIVLNFHLSGQKHANMMKKQQEGSS 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7568991 7571357 + Bda023787.1 Bda06g00530 8112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00530 419 PANTHER ZINC FINGER RNA-BINDING PROTEIN 11 268 - -
Bda06g00530 419 Gene3D Classic Zinc Finger 210 260 - -
Bda06g00530 419 Gene3D Classic Zinc Finger 364 416 - -
Bda06g00530 419 Gene3D Classic Zinc Finger 123 170 - -
Bda06g00530 419 Gene3D Classic Zinc Finger 271 324 - -
Bda06g00530 419 PANTHER - 11 268 - -
Bda06g00530 419 PANTHER - 271 414 - -
Bda06g00530 419 SUPERFAMILY beta-beta-alpha zinc fingers 274 322 IPR036236 -
Bda06g00530 419 SMART c2h2final6 383 407 IPR013087 -
Bda06g00530 419 SMART c2h2final6 231 255 IPR013087 -
Bda06g00530 419 SMART c2h2final6 138 162 IPR013087 -
Bda06g00530 419 SMART c2h2final6 292 316 IPR013087 -
Bda06g00530 419 SUPERFAMILY beta-beta-alpha zinc fingers 383 414 IPR036236 -
Bda06g00530 419 MobiDBLite consensus disorder prediction 344 358 - -
Bda06g00530 419 PANTHER ZINC FINGER RNA-BINDING PROTEIN 271 414 - -
Bda06g00530 419 SUPERFAMILY beta-beta-alpha zinc fingers 227 257 IPR036236 -
Bda06g00530 419 Pfam Zinc-finger of C2H2 type 233 255 - -
Bda06g00530 419 Pfam Zinc-finger of C2H2 type 139 162 - -
Bda06g00530 419 Pfam Zinc-finger of C2H2 type 384 407 - -
Bda06g00530 419 Pfam Zinc-finger of C2H2 type 293 316 - -
Bda06g00530 419 MobiDBLite consensus disorder prediction 319 364 - -
Bda06g00530 419 SUPERFAMILY beta-beta-alpha zinc fingers 133 168 IPR036236 -
Bda06g00530 419 SMART ZnF_U1_5 289 323 IPR003604 GO:0003676|GO:0008270
Bda06g00530 419 SMART ZnF_U1_5 135 169 IPR003604 GO:0003676|GO:0008270
Bda06g00530 419 SMART ZnF_U1_5 380 414 IPR003604 GO:0003676|GO:0008270
Bda06g00530 419 SMART ZnF_U1_5 228 262 IPR003604 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00530 - - - qsu:112029653 347.821
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00530 Bda-Chr6:7568991 Bda11g00427 Bda-Chr11:4526131 2.56E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g614 . . Bda06g00530 . . . . Bma12g00974 . . Cma10g00222 . Car10g00206 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe07g00764 . . . . . . . . . . . Cpe18g00771 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011197 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16013 PF12874 zf-met 1.30E-05 CL0361 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00530 Bda_Chr06 FPKM 10.406909 12.315513 8.151065 7.968547 7.722599 8.407856 7.940808 9.540091 9.799734