Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00541 ATGGCGTTTCCTGCAGTTGCTCTCCTGGGTTTTCTTTCTCTGGTTTCGTCGATTCATGGGCATGAAAATGGAGCTTGGATTGATGCACATGCAACTTTCTACGGAGGAGGTGATGCTGCTGGTACAATGGGTGGAGCTTGTGGGTATGGAAATTTGTACAGCCAAGGCTATGGAACAGAAACTGCTGCTTTGAGCTCAGCATTGTTCAACGATGGACAAGCCTGTGGAGCTTGTTTTGAGATTAAGTGTGTAAACGACGATAAATGGTGTCTTTCAGGCTCCATTCTCGTCACTGCCACCAATTTTTGCCCACCAAATAACGCCCTTCCTAACAACGCAGGCGGATGGTGTAATCTACCCCAACACCATTTTGATCTTTCTCAGCCCGTCTTCCAGAAAATCGCTCAATATAAAGCTGGAATCGTTCCAGTCTCTTACAGAAGGGTGCATTGTTTGAAGAAGGGAGGAGTGAGATTTACTATCAACGGCCATTCTTACTTCAATCTAGTTTTGATCACAAACGTTGGAGGAGCTGGGGATGTCCATGCAGTTTGGATCAAAGGGTCCAAAACTGGGTGGCAACCAATGTCAAGGAACTGGGGCCAGAACTGGCAAAGCAACGCCTGTTTAGACGGACAGAGCCTCTCTTTTAAGGTCATTACCAGCGACGGCCGAGCTCTAGTGTCCGACAATGTCGCCCCTTCTGGGTGGGCCTTCGGCCAGACCTTCACTGGCCAACAATTTCCTTAA 750 48.13 MAFPAVALLGFLSLVSSIHGHENGAWIDAHATFYGGGDAAGTMGGACGYGNLYSQGYGTETAALSSALFNDGQACGACFEIKCVNDDKWCLSGSILVTATNFCPPNNALPNNAGGWCNLPQHHFDLSQPVFQKIAQYKAGIVPVSYRRVHCLKKGGVRFTINGHSYFNLVLITNVGGAGDVHAVWIKGSKTGWQPMSRNWGQNWQSNACLDGQSLSFKVITSDGRALVSDNVAPSGWAFGQTFTGQQFP 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7696263 7697165 + Bda023799.1 Bda06g00541 8123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00541 249 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Bda06g00541 249 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Bda06g00541 249 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Bda06g00541 249 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Bda06g00541 249 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Bda06g00541 249 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Bda06g00541 249 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Bda06g00541 249 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Bda06g00541 249 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Bda06g00541 249 SMART dpbb_1 61 146 IPR007112 -
Bda06g00541 249 Pfam Lytic transglycolase 61 146 IPR009009 -
Bda06g00541 249 PANTHER EXPANSIN 5 248 - -
Bda06g00541 249 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
Bda06g00541 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Bda06g00541 249 Gene3D - 156 248 IPR036749 -
Bda06g00541 249 PANTHER EXPANSIN-A15 5 248 IPR002963 GO:0009664
Bda06g00541 249 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Bda06g00541 249 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Bda06g00541 249 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Bda06g00541 249 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Bda06g00541 249 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Bda06g00541 249 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Bda06g00541 249 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Bda06g00541 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Bda06g00541 249 Gene3D - 12 151 IPR036908 -
Bda06g00541 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00541 Bda-Chr6:7696263 Bda11g01211 Bda-Chr11:12476870 3.42E-141 dispersed
Bda07g01328 Bda-Chr7:16055293 Bda06g00541 Bda-Chr6:7696263 1.46E-86 dispersed
Bda06g00541 Bda-Chr6:7696263 Bda10g01067 Bda-Chr10:44677129 3.45E-144 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00541 - K20628 jre:109004085 424.476