Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00544 ATGGCAGCAAACTCAGCTATGATTTCAGTCGGAACAACTGCCTCCCTTGGCACCAAAGTGAACTCATTTCCGCAGTCAAAGCCGTCCGGTTTAAGGCTCGGCTCACAAAACTCTCTCAAGAGCTTCTGTGGCCTCAAGGCTGGAACGTTTGTTGGGTATGAATCAGAGTTGTCTTTCCTTGGAAAAGAAAGTAGCACAATTTTACATTCTTTTTCCCGAAAAGCCCACAAACGAAATCAAGAGTTGCAGTATCGCCCTCGACCTCAGGCCCATGCATCGTACAAAGTGGCAGTGCTTGGAGCTGCTGGTGGAATCGGTCAGCCTTTGTCACTTCTCATCAAAATGTCTCCGTTAGTTTCTACGCTTCACCTTTATGATATAGCAAATGTCAAGGGAGTTGCAGCCGATCTTAGTCACTGCAATACTCCATCTCAAGTTTTGGATTTCACTGGCGATTCTCAGTTAGCCGGTGCTTTGAAAGGTGTAAATGTTGTCGTCATTCCTGCTGGGGTCCCACGTAAGCCTGGCATGACCCGTGATGATCTCTTCAACATAAATGCTGGCATTGTAAAGAACTTGGTCGAGGCTGTAGCGGATAATTGCCCCGATGCCTTCATCCATATCATTAGCAATCCAGTGAACTCTACGGTGCCGATTGCAGCTGAAGTTCTGAGACGAAAGGGTGTCTACAATCCAAAAAAGTTATTTGGCGTTACCACATTGGACGTCGTGAGGGCAAACACTTTTGTTTCTCAGAAAAAGAACTTAAAATTGATAGATGTTGATGTTCCTGTCGTCGGAGGACATGCCGGAATAACTATCCTTCCTCTGCTTTCGAAGACCAAGCCTTCGGTAAATTTTTCAGATGAAGAGGTTGATAAATTGACCATTAGAATTCAAAATGCTGGTACGGAGGTGGTCGAGGCCAAGGCTGGTGCCGGGTCGGCCACCTTGTCAATGGCATATGCAGCTGCAAGATTTGTCGAGTCGTCTCTTCGGGCTCTCGATGGAGATAGTGATGTCTATGAGTGTGCTTATGTACACTCCGATCTCACCGAGCTTCCGTTCTTTGCATCAAGGGTTAAGATCGGAAGGAAAGGAATCGAAGCTTTTGTCCCATCCGATCTTGAGGGATTGACTGAATACGAGCGGAGGGCTCTGGATGCGTTAAAGCCGGAACTGAAGGCTAGCATTGAGAAAGGAATCGCATTTACGCAGAAGCAAACAGTGGCTGCATGA 1239 46.89 MAANSAMISVGTTASLGTKVNSFPQSKPSGLRLGSQNSLKSFCGLKAGTFVGYESELSFLGKESSTILHSFSRKAHKRNQELQYRPRPQAHASYKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANVKGVAADLSHCNTPSQVLDFTGDSQLAGALKGVNVVVIPAGVPRKPGMTRDDLFNINAGIVKNLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLRRKGVYNPKKLFGVTTLDVVRANTFVSQKKNLKLIDVDVPVVGGHAGITILPLLSKTKPSVNFSDEEVDKLTIRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDSDVYECAYVHSDLTELPFFASRVKIGRKGIEAFVPSDLEGLTEYERRALDALKPELKASIEKGIAFTQKQTVAA 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7717519 7718757 + Bda023802.1 Bda06g00544 8126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00544 412 Gene3D - 239 410 IPR015955 GO:0003824|GO:0016616
Bda06g00544 412 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 95 406 IPR010097 GO:0006099|GO:0030060
Bda06g00544 412 Pfam lactate/malate dehydrogenase, NAD binding domain 95 237 IPR001236 GO:0016491
Bda06g00544 412 ProSitePatterns Malate dehydrogenase active site signature. 238 250 IPR001252 GO:0006108|GO:0016615
Bda06g00544 412 Gene3D - 92 238 - -
Bda06g00544 412 PANTHER MALATE AND LACTATE DEHYDROGENASE 26 412 - -
Bda06g00544 412 SUPERFAMILY LDH C-terminal domain-like 238 405 IPR015955 GO:0003824|GO:0016616
Bda06g00544 412 PANTHER MALATE DEHYDROGENASE, GLYOXYSOMAL 26 412 - -
Bda06g00544 412 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 239 404 IPR022383 GO:0016616
Bda06g00544 412 CDD MDH_glyoxysomal_mitochondrial 94 404 IPR010097 GO:0006099|GO:0030060
Bda06g00544 412 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 83 238 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00544 K00026 MDH2; malate dehydrogenase [EC:1.1.1.37] - zju:107419247 650.973
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00784 Bda-Chr5:56303501 Bda06g00544 Bda-Chr6:7717519 5.90E-141 dispersed
Bda05g00793 Bda-Chr5:56349966 Bda06g00544 Bda-Chr6:7717519 9.54E-143 dispersed
Bda06g00544 Bda-Chr6:7717519 Bda15g00476 Bda-Chr15:7932042 5.51E-135 dispersed
Bda06g00544 Bda-Chr6:7717519 Bda13g00062 Bda-Chr13:875389 8.25E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g558 . . Bda06g00544 . Bpe12g00545 . . Bma12g00996 . . Cma10g00192 Cma11g00142 Car10g00183 Car11g00152 . . . Bhi02g00315 Tan09g2120 . . Hepe09g0117 . . Cla06g01590 Cam06g1762 Cec06g1815 Cco06g1821 Clacu06g1725 Cmu06g1669 Cre06g2485 . . . . . . . . Blo13g00007 Blo15g00310 . . Bpe07g00781 . . Bma08g00222 . . Cmo11g00167 . . . . . . . . . . . . . . . . . . . . Lsi06g01462 Csa01g00236 Chy02g02496 Cme02g01883
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003196 1 4 2 3 2 1 2 2 1 4 1 1 1 3 2 1 1 2 0 2 3 1 1 1 0 0 1 4 2 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00544 Bda_Chr06 FPKM 5.218649 5.764359 1.91661 1.81302 18.394266 12.679152 17.160006 3.28527 3.19258