Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00548 ATGGTAACGCAGATTGGAAGGCCTGGGAATTGGTGGAGTCAATGCAAGACTGTTGCCTTCTTCTGGGTCGTCTCTGCTTTCTTAATCTATTTCCTCTTTCAAATGGCGCTTCAGAACTCAACCCACGATTACTCACCTTCGTCTACTTCATCAGATGCTTTGATGTCAAATTCAGAGAAAAGATCGATATTATACAATAAGATGGCAAGAGATTTAGAAGAACACGGACCAATGTTCCTTAAACATGGCGAAACATCACAGTCATTGTCGCTTTCAGATATCTTCACTCTGAAGGACGGAACTGTAACTCCTGTTCTTAAGGCTGCCATTCCTCCAGTACGAGCCAATGTCTTGCATTTAAGCGAAAAATATTCAATTCCTATCGCCGAAGTGGTAAAGAACGTATTTAACCCCTATTTTGACAAAGTAATCTGGTTCCAGAACTCGAGTTTGTACCATTTTAGCATGTTTCATGCCTCGCATCATATTACGCCTGTTCCTGCCACGGAAGATGAGATTGAAATCGAAGCAGCTGCTGTTAGAGCTGTCTCCGAGCATATATGCCCCTTGAAAATCGTTTTAGATAGAGTAGTTCTAACTTCAACTGGTGTGCTGCTTGGTTGCTGGCAGGTCTTATCTGGAACAGATCCTTTAACCATTCGGGCCAAATTGAGGGATGCACTCCCGCAAGCCCCCGACAAGCAGCTTTACGACCCCGTCATTCTTCACACGTCATTTGCGAGGCTTTTGGGTCACCCTAAAGCATCAAATACGAAGCTGGATCGAATTTCAGACGAACTGCTATTATTTCATGAGCTAGTTGATAGTCTGAATGATAAAATCAAAGGACTTGAGGCCACGGTGTCGGAGCTCTGGTATGTGGAGGAGTATGACATTTTGGCTCTTGCCCTGGACGGGAGAATGAAGGTGCGAAAATGCCGACTCGGCTGCACACAAGGTTAG 963 44.65 MVTQIGRPGNWWSQCKTVAFFWVVSAFLIYFLFQMALQNSTHDYSPSSTSSDALMSNSEKRSILYNKMARDLEEHGPMFLKHGETSQSLSLSDIFTLKDGTVTPVLKAAIPPVRANVLHLSEKYSIPIAEVVKNVFNPYFDKVIWFQNSSLYHFSMFHASHHITPVPATEDEIEIEAAAVRAVSEHICPLKIVLDRVVLTSTGVLLGCWQVLSGTDPLTIRAKLRDALPQAPDKQLYDPVILHTSFARLLGHPKASNTKLDRISDELLLFHELVDSLNDKIKGLEATVSELWYVEEYDILALALDGRMKVRKCRLGCTQG 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7750637 7753193 + Bda023806.1 Bda06g00548 8130

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00548 320 PANTHER TRANSMEMBRANE PROTEIN 14 319 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00548 - - - tcc:18604656 439.113
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g536 . . Bda06g00548 . . . . Bma12g00999 . . . Cma11g00149 . Car11g00146 Sed08g0208 . . Bhi02g00331 Tan09g2132 Cmetu02g0840 . Hepe09g0126 . . . . . . . . . . . Cone13ag0076 . . . . . . . . . Bpe07g00786 . . . . . Cmo11g00158 . . . . . . . . . . . . . . . . . . . . . Csa01g00227 Chy02g02505 Cme02g01891
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011199 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 3 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00548 Bda_Chr06 FPKM 25.524179 30.448221 38.69276 42.082737 21.067503 21.981009 19.783989 19.447029 18.166914