Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00552 ATGGAGGCTTCTTCTAGGTCTGCAGACGTCGCCGCCATCAAACAGGAATCTGAGAGAGATAAGTCCAGTGATGGGGATGAAGATTTTAATCGTGAGGGCTTTACCAAGGTCCCGATTGTGACAGAAGGGGAAAGATCTACAATGGAACTCGACGTAGTGACATCTTCCTCGAGTCGAAATGATCAGGACGAGGAGCTTGAATCAGCGAGAGCTGAAATGGGAGAGGTGAGAGAAGAAAATCAACGGTTGAAAATGTGCTTAGATCTAATAATGAAGGATTACAGGACGCTCCAAATGCAGTTTGATGACATTGTTCAGCAAAATGGAAAGAAGAAAAAGCAAAGAGCTGAGACGGATCGAGAAGTTGAAGAAACCGAGCTCATTTCGCTTACTCTCGGAAGATTTCCTAGCGAAGAAAAGAAGATTAACGAAAGCACCATAAATTCTCATCAATTGATCAAAGAAAATGATCAACAGATTGCACAACAGGACTTAACTCTTGGGTTAGATTGCCAAGCTAATGGTTCTAGGTTAAGTGATCAGATGAAGGCGCTTTCGCCTAAAGATCGAAGCCCGAGTTTGAACAGTGTCGAAGAGATAAAGGAAGGAGAAGGTGAAGAGCCATGGCTACCTAGTAAGGGTTTGAAGACAATGAGAAGTGGACAAGACGATGTAGTGCAGCAGAATCCACCCAAGAAAGCTAGGGTTTGTGTGAGGGCTCGTTGTGATACACCCACGATGAATGATGGGTGTCAATGGAGGAAATATGGGCAGAAGATAGCAAAAGGAAACCCATGCCCTAGAGCTTATTATCGTTGCACTGGAGCTCCTTCATGTCCAGTGAGGAAACAGGTTCAAAGATGTGCTGAGGAAATGTCCATTTTAATCACAACCTACGAAGGAACACACAACCACCCTCTCTCCGTCTCAGCCACCGCCATGGCTTCCACCACTTCGGCGGCGGCAGCAATGCTATTATCTGGTTCATCGAGCTCACGATCCAGCCCTAACCCAGCAACAGCGACAGCCATCACAGCTCCAGCCAACCTCCATGGAATGAACTTCTATCTTTCCGACGGTTCAAATTCAAAACAATTTTTCTTACCCAATTCTTCCATATCATCTTCCTCGCCCACACACCCGACGATCACTCTAGACCTAACTTTGAACCCATCGTCTTCTTCCTCCTCCTCCCATTTTAGCAGACTGTATCCTCCCAGATATCCTTTCACAAGCCTGGATTTTGCTTCTTCTCAATCCAACGTTATGTCTTGGAGTAATGGCCTTCTTGGCTATGGAAATCAACCGCCTTACAATAGAAGCCAAATGGGACCTCTTGAAATCGGAGGAATAGCCTTACAAAATAATATCTACAAAAATTTTATGCAAAAGCCTGACAACTCACCGGTGCCGGCGCCACGACACCCTCTTCCAGACACGATTGCCGCCGCTACTAAGGCAATTACTTCAGACCCTAGTTTCCAATCTGTCTTAGCAGCTGCTTTGACGTCATTTGTCGGAAACGGTGGTGGTGGTAGCGGCGGAGGAGGTGGCAGTGAAAATTTTTCGGAGAAATTAAAGTGGACGGAGAATTTTCCATTATCGACCTCTAACCAAAAAGGAAACGGGTGCGGATCGAGCTTCATCAACACAGCGCCAACGAAAAATTCTCAGCCTGCAAACTTGATGTTCTTACCGCCAAATTCGTCGCCATTTTCGAGCTCCAAAAGTGCATCTACATCTCCTGGAGATAACAGAGACCACCAACCTAGTTTATAA 1779 45.81 MEASSRSADVAAIKQESERDKSSDGDEDFNREGFTKVPIVTEGERSTMELDVVTSSSSRNDQDEELESARAEMGEVREENQRLKMCLDLIMKDYRTLQMQFDDIVQQNGKKKKQRAETDREVEETELISLTLGRFPSEEKKINESTINSHQLIKENDQQIAQQDLTLGLDCQANGSRLSDQMKALSPKDRSPSLNSVEEIKEGEGEEPWLPSKGLKTMRSGQDDVVQQNPPKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPSCPVRKQVQRCAEEMSILITTYEGTHNHPLSVSATAMASTTSAAAAMLLSGSSSSRSSPNPATATAITAPANLHGMNFYLSDGSNSKQFFLPNSSISSSSPTHPTITLDLTLNPSSSSSSSHFSRLYPPRYPFTSLDFASSQSNVMSWSNGLLGYGNQPPYNRSQMGPLEIGGIALQNNIYKNFMQKPDNSPVPAPRHPLPDTIAAATKAITSDPSFQSVLAAALTSFVGNGGGGSGGGGGSENFSEKLKWTENFPLSTSNQKGNGCGSSFINTAPTKNSQPANLMFLPPNSSPFSSSKSASTSPGDNRDHQPSL 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7798195 7801743 - Bda023812.1 Bda06g00552 8134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00552 592 MobiDBLite consensus disorder prediction 181 207 - -
Bda06g00552 592 MobiDBLite consensus disorder prediction 12 33 - -
Bda06g00552 592 MobiDBLite consensus disorder prediction 58 75 - -
Bda06g00552 592 MobiDBLite consensus disorder prediction 1 75 - -
Bda06g00552 592 Pfam WRKY DNA -binding domain 248 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda06g00552 592 Gene3D WRKY domain 232 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda06g00552 592 Coils Coil 59 86 - -
Bda06g00552 592 SUPERFAMILY WRKY DNA-binding domain 240 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda06g00552 592 ProSiteProfiles WRKY domain profile. 242 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda06g00552 592 SMART WRKY_cls 247 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda06g00552 592 MobiDBLite consensus disorder prediction 533 592 - -
Bda06g00552 592 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 45 586 - -
Bda06g00552 592 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 45 586 IPR044810 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda06g00552 Bda11g01690 CCT
Bda06g00552 Bda14g00841 CCT
Bda06g00552 Bda11g01690 ECH
Bda06g00552 Bda14g00841 ECH
Bda06g00552 Bda15g00578 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00552 Bda-Chr6:7798195 Bda15g00953 Bda-Chr15:17560389 5.23E-55 dispersed
Bda11g01690 Bda-Chr11:51041601 Bda06g00552 Bda-Chr6:7798195 8.27E-89 wgd
Bda14g00841 Bda-Chr14:6479186 Bda06g00552 Bda-Chr6:7798195 2.12E-81 wgd
Bda15g00578 Bda-Chr15:9002564 Bda06g00552 Bda-Chr6:7798195 0 wgd
Bda15g00595 Bda-Chr15:9149910 Bda06g00552 Bda-Chr6:7798195 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16018 PF03106 WRKY 1.60E-23 CL0274 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00552 - - tcc:18604620 526.939