Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00553 TTTCTTAGCATCGCCATGACTCTGCTAGAAGTAATTAAAAAGGCGTCCACCAGTTCAGAACCGTCACTTATAAATCCTATCGATGGATGGAAGATTTCTGAAGCTGATTCCAAATTCATCAACTCAAGCAAAAACTTCTATGGAAATCTTTCTCGGAAGCTGAAAAATCCAAACAAGTTCGGTAAAGAAGAGTTTGTTGGAACTTTGATTACATTTCTCGAGACGGTACGGACAAGATTTGGAATACCTATTTCGGTCGATTCAACAGACAGCAGATATACTCGGGTTATGATCGAGAAAGTTGGGTGTCTGATGGATAAGGATGTGGCTGACTTGGTTTTAGAAGCATGCATTGTTTTGGAGGTGTGGGACTTGCTAGAGACTTTGATTGTTAATAAGCTTGTCAAGCATTCATCTTATTCTACCTTAATCACAAAGCTTGCCGTCAAAAATCGTCCCGATTTGCTCTCTCTTTGCATCGTTCATGCATCAGATTTTGGTGTAAATGACTTACTCTGCATCTTGAAGTATTTCCTTTTGCCACCAAAAGATGGTTATGAAAACATGATCAATGTGAGAAATGAATGGGAAAGCCAGGCCATTCTAGCTCTCGAGAAGGCAACTGACAAAAATCTAAAGGGGAAAAAGTCAAGTCTGGCTAAGGAGTCATCGATTTTGCTCATGATCGCTTATGATGGATTTTCTCCGAATGAGATTTGTTTACATTATTTGTTGGCATCGCCAAATCTCGACGAAGTGATATTATCTTCCGTTCCAATTCATGACCAAATTGAAGGAATCAATTGGCTTTATTCACAAAACCATTTCCGGCCCCGTTGTTTCTTCTCCGGCCGACGAGAAGCTGCCATTTTCGATCACCTTCTCGATTCCACAAATGGAAGAGAGAGTGACAATGGCTACTCCCCTGTTTCTGACCACCGTTTTCCCAGCATCGCCGGGATCGGATCCGCAGTGTTCTTTCAAGGTCTCAAAAAGTTCTCCTATGAAGATTGGACGTCCATTAGAAGGTTCTTATCGAATAAATTCCCCACTATACGTGCTTACGGGGCTGTACGCTTCGACGCCCTGGCCAAAATGTCGTCCGAATGGGAAGCTTTCGGCTCGTTTTACTTCATGATTCCTCAGGTAGTCGAGTTTGATGAGCTTAACGATGACTCGATCCTTGCCGCAAATGTTGCTTGGGACGATGCTCTTTCGTGGACTTGGGAAAAAGCGGTCAATGCCCTTGAAGTTACTATGACTCGGGTTTCGTCTAATATTGCTAAGTTGCAGAAAGAGCTTCCCCTCACATCCATACTCAGCCTTGACCACCTTCCCGACAAGACTTACTGGGAAACTGCTGTTAACCAAGCATTGCATAAGATCAGACAGCCGGATTCACGGCTCACCAAGGTCGTATTGGCACGGAGAAGCAGATTGGTAACTTCAATTGATATCGATCCAATCGCTTGGATAGCTTGCTTGGGGATTCAAGGGGATGATTCTTATCAATTTTGTCTTCAGCCACCTAATGCGCCGGCATTCATTGGAAACACGCCGGAGCAGCTATTTCGAAGAAAAGGGCTGGCCATCAGAAGTGAGGCACTGGCTGCTACTCGAGCCCGAGGTCGACAACCCGCTCATGATCTTGAAATAGAACTCGACTTACTTTCCAGCTTGAAGGACGACCTCGAGTTTTCGATCGTGCGAGAGAGCATAAGAAAGAAATTAGAGGTGAAGAATCACAATTTCTTCTGTCCTCTTTTTTCGCAGGCTGTGTGTAATGCAGTTGAGGTGAAACCGAAGAAAACGGTACGAAAACTTCCGAGAGTGCAGCATTTATATGCCCAATTGGCCGGCCGGTTAAAAAGCGAAGGCGACGAGTTTGACATTTTATCGTCACTTCATCCAACTCCGGCAGTCTGTGGATGTCCGACGGAGGAAGCTCGCTGGATAATTGCAGAAACCGGTACAACTACTGTTAAAAACGTCTTTCCCGGAGGGGGTGTTTCGATATTTTTAATAATATGCCGGTTATGTTGTCCAGAAGTATTTGACAGAGGAATGTATGCTGCCCCCATTGGTTGGTTTGGAGGGGGGGAGAGTGAATTTGCAGTAGGAATCAGATCAGCCTTAGTGGAAAAGGGTCATGGTGCGATAATGTACGCTGGGACGGGAATCGTCGAAGGGAGTGACCCTTCGTCCGAGTGGAACGAACTCGAATTGAAGATATCTCAGGTGCATATTTTGCAATATTTACTATCAAAACAAAACCACCAAATGCTAATTTTACGTGTCTTTATTCATCCTACAGTTCACCAAGTTGCTCAAACTCCCTCGAAATTTCCAATGAGATTAAAACTAAGATCAACTAAAAGAGGTAATTATTTGTTTCTTACGTTCACGCTTCAGGCAAACTCGAGATTTTCCGATAAAATTTTCGTCATGTCCTTACTACTCGGCATTTGCAGATGA 2475 43.88 FLSIAMTLLEVIKKASTSSEPSLINPIDGWKISEADSKFINSSKNFYGNLSRKLKNPNKFGKEEFVGTLITFLETVRTRFGIPISVDSTDSRYTRVMIEKVGCLMDKDVADLVLEACIVLEVWDLLETLIVNKLVKHSSYSTLITKLAVKNRPDLLSLCIVHASDFGVNDLLCILKYFLLPPKDGYENMINVRNEWESQAILALEKATDKNLKGKKSSLAKESSILLMIAYDGFSPNEICLHYLLASPNLDEVILSSVPIHDQIEGINWLYSQNHFRPRCFFSGRREAAIFDHLLDSTNGRESDNGYSPVSDHRFPSIAGIGSAVFFQGLKKFSYEDWTSIRRFLSNKFPTIRAYGAVRFDALAKMSSEWEAFGSFYFMIPQVVEFDELNDDSILAANVAWDDALSWTWEKAVNALEVTMTRVSSNIAKLQKELPLTSILSLDHLPDKTYWETAVNQALHKIRQPDSRLTKVVLARRSRLVTSIDIDPIAWIACLGIQGDDSYQFCLQPPNAPAFIGNTPEQLFRRKGLAIRSEALAATRARGRQPAHDLEIELDLLSSLKDDLEFSIVRESIRKKLEVKNHNFFCPLFSQAVCNAVEVKPKKTVRKLPRVQHLYAQLAGRLKSEGDEFDILSSLHPTPAVCGCPTEEARWIIAETGTTTVKNVFPGGGVSIFLIICRLCCPEVFDRGMYAAPIGWFGGGESEFAVGIRSALVEKGHGAIMYAGTGIVEGSDPSSEWNELELKISQVHILQYLLSKQNHQMLILRVFIHPTVHQVAQTPSKFPMRLKLRSTKRGNYLFLTFTLQANSRFSDKIFVMSLLLGICR 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7806279 7815866 + Bda023813.1 Bda06g00553 8135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00553 824 PANTHER ISOCHORISMATE SYNTHASE 2, CHLOROPLASTIC 247 749 - -
Bda06g00553 824 Pfam chorismate binding enzyme 449 743 IPR015890 -
Bda06g00553 824 Coils Coil 413 433 - -
Bda06g00553 824 PANTHER - 247 749 IPR044250 GO:0008909
Bda06g00553 824 SUPERFAMILY ADC synthase 274 746 IPR005801 GO:0009058
Bda06g00553 824 Gene3D Anthranilate synthase 242 751 IPR005801 GO:0009058
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00553 K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] - egr:104419181 577.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00553 Bda-Chr6:7806279 Bda10g01118 Bda-Chr10:45164365 7.95E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g515 . . Bda06g00553 . . . . Bma12g01003 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0086 . . . . . . . . Bpe07g00792 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010500 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00553 Bda_Chr06 FPKM 0.801802 2.468178 0.0 0.0 0.0 0.0 0.0 0.0 0.137355