Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00555 ATGAAACTACAAGGTAAAGTGGCCATAATCACCGGCGGCGCAAGCGGTATTGGAGAGGCCACTGCTCGTTTATTCGCCGATCACGGTGCTCGTATGGTTGTGATTGCCGATATCCAAGATGAATTAGGGAGGCGAGTGGCCGTAGCGATCGGAACTCACAGATGCTCCTACGTCCACTGCGATGTCGCCGATGAAGATCAAGTGAAGATGCTGGTGAAATCGACCGTCGAAAATCACGGCCAGCTCGACATCATGTTCAGCAACGCTGGAATTCTCAGTGCTCGAGATCAGACCATTCTGGAGCTCGATTTCTCGGCCTTCGACCGCCTCTTCGCAATCAACGTCCGAGCTATGGCGGCGTGCGTGAAACACGCGGCGCGTGTAATGGTGGAACGGAGTGTGAGGGGGAGCATTGTGTGCACGGGAAGTGTAGCCGCCACACGCGGAGGCGAACGAAGGACGGATTACTGTATGTCGAAGCACGCCGTGCTAGGGCTGGTTCGATCTGCTAGCGTACAGCTTGCGAAGCACGGGATTAGAGTGAACTGCGTATCGCCGAATGCGTTGGCGACGCCATTGACGGTTCAGGCTCTCGGCATGGGAATGGAAGAGGTTGAGAAGGTGTACGAGCAATATGCGAGGTTGAAAGGCGTGGTGCTGAGACCGAGAAACATCGCCGACGCGGTGCTATTTCTCGCTTCCGGTGATTCTGAGTTTGTTACCGGCCACGATCTCGTCGTCGACGGCGGATTCTGCGCCGGTACTGCCTGA 771 55.9 MKLQGKVAIITGGASGIGEATARLFADHGARMVVIADIQDELGRRVAVAIGTHRCSYVHCDVADEDQVKMLVKSTVENHGQLDIMFSNAGILSARDQTILELDFSAFDRLFAINVRAMAACVKHAARVMVERSVRGSIVCTGSVAATRGGERRTDYCMSKHAVLGLVRSASVQLAKHGIRVNCVSPNALATPLTVQALGMGMEEVEKVYEQYARLKGVVLRPRNIADAVLFLASGDSEFVTGHDLVVDGGFCAGTA 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7821760 7822530 - Bda023815.1 Bda06g00555 8137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00555 256 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 143 171 IPR020904 GO:0016491
Bda06g00555 256 PRINTS Glucose/ribitol dehydrogenase family signature 130 146 IPR002347 -
Bda06g00555 256 PRINTS Glucose/ribitol dehydrogenase family signature 215 235 IPR002347 -
Bda06g00555 256 PRINTS Glucose/ribitol dehydrogenase family signature 80 91 IPR002347 -
Bda06g00555 256 PRINTS Glucose/ribitol dehydrogenase family signature 177 194 IPR002347 -
Bda06g00555 256 PRINTS Glucose/ribitol dehydrogenase family signature 156 175 IPR002347 -
Bda06g00555 256 PRINTS Glucose/ribitol dehydrogenase family signature 7 24 IPR002347 -
Bda06g00555 256 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 253 IPR036291 -
Bda06g00555 256 Gene3D - 1 254 - -
Bda06g00555 256 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 IPR002347 -
Bda06g00555 256 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 IPR002347 -
Bda06g00555 256 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 IPR002347 -
Bda06g00555 256 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 187 - -
Bda06g00555 256 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3B-LIKE 2 251 - -
Bda06g00555 256 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 2 251 - -
Bda06g00555 256 Pfam Enoyl-(Acyl carrier protein) reductase 12 251 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00555 - - - pvy:116134807 382.874
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00699 Bda-Chr4:55789405 Bda06g00555 Bda-Chr6:7821760 6.48E-88 dispersed
Bda06g00555 Bda-Chr6:7821760 Bda10g00448 Bda-Chr10:37308709 3.78E-67 dispersed
Bda06g00555 Bda-Chr6:7821760 Bda05g01140 Bda-Chr5:59608001 8.62E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g497 . . Bda06g00555 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo15g00306 . . Bpe07g00796 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014675 1 0 2 1 1 0 1 0 0 0 0 0 0 0 0 1 0 2 0 0 0 4 0 1 1 0 0 0 1 3 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00555 Bda_Chr06 FPKM 1.337945 0.0 3.115571 2.701132 2.253883 0.95026 0.0 1.6659 1.442113