Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00556 ATGTTAAATGCAAAGAAGATCAGCAACCTTTCAAGTGGTGCAAGGTCGTTTTTCCTTTCCGGAGCACGATCTAATGCAGCTGATGGAAGTTCGTGTGTCTTCTCCGAAGATGAAACCTGTGTTTCCCAAAGGCATCAATTTAGAAATGAATCTTTCTGCACAAAGCAGACACCCCCCTTGGCATCCAATATTTCTGCTAAAGTAGTGACTTTGGCACCGATAGATGTAGCCAAAGCAGTTGTTCATTCATCAATTTCTTCTGGAAAACCAGACTCAGTAAATCAGTCAAGCAGCCCAGATTCTTCTCTCATCACTGCTGACCAGTTTGTTAAGGTGAGCATTGCAGCTGTAAACTTCCTGTCGGATTTAGTAAATTATAAGTTTCAATTGTCGAATGGGGGTGGAGTACTCATCTCGGCAAAGAATTGCATGAATGATCCACTTTCAAATATCAAATCATCGCGTGTGAAGCATGTTAAAAGAGAAAACTTTTCGAGTGTTTACCCAAATTCATTATCTGAGACAGCAGTAAGTTCTAAATCTAGAGGTAACAATTGTAATGGGTCAAAAGGTAAGGGTGATCAGTCTGGCTCGGTCAGAGATTTGAAACAAGTTCGACATACTGGAACTGACAGCACCTTTTCCGATAGTAGTGATAGAAAATATTATAGTCAGAAATCAAAAGTACATTCTGATCGATCAGCGCCTAATTGTGATACTAATTTACAGTCAGCAGATGTAGAGTATGTTTCGAAAAGGTTCTACAATGTAAATGCTGCCTCAGCAGTGGTCCCGAAGACGAAGCACTTTGGAAATGCATCACATGTTTTGAAAAATGTTTCTCATATTCTCAGAGGGCATAAGTGGGGCCCTTCTGCCGAAGAGGCTCTTGGAAAGCTTAATTGTTCCATAGATGCCTTTCAAGCCAACCAAATTTTAAAGCAGTTGCCAGATCATTCAGTTGCTCTTGGCTTTTTCTATTGGTTAAAGCAGCAATCGGGCTTCAAGCACGATGGCCACACTTACACCACTATGGTTGGCATTCTTGGCCGTGCAAGACAGTTTGGAGCAATAGACCGATTACTCGATCAAATGGTCAATGATGGTTGCCGACCTAATGTCGTGACTTATAATCGTCTGATTCATAGTTATGGTCGAGCTAACTATTTGAAAGAAGCTATATACGTATTCAATCAAATGGGGGAAGCTGGATGCGAGCCGGACCGTGTTACCTTCTGCACACTCATCGACATCCATGCCAAAGCCGGGTTTCTCGATGTTGCAATGTGCATGTATAGAAGAATGCAGGAGGCTGGACTTACCCCTGATACTTTTACCTACAGTGTCATAATCAACTGCCTTGGAAAAGCTGGTCATTTAAATGCTGCCCATCGAATTTTCTGCGAAATGGTCGATCAAGGTTGTGTTCCTAATCTAGTCACCTATAATATTATGATTACTCTTCAAGCCAAAGCGAGGAACTATCAAATTGCGTTGAAGCTTTACCGAGACATGCAGAATGCGGGTTTTCAACCCGACAGAGTTACTTACAGCATAATTATGGAGGTGCTTGGCCACTGTGGGAATCTCGAGGAGGCAGAATCTCTGTTTGTTGAGATGCAACTGAAGAATTGGGTGCCAGATGAACCGGTTTACGGCCTTCTCGTAGATTTATGGGGAAAATCTGGTAATGTTGAAAAAGCTTGGGAGTGGTATAATGCTATGCTCGATGCGGGTTTGAGGCCGAACGTCCCAACCTGCAATTCTATGCTCAGTGCTTTTCTTCGAGCCCACCGACTTTGCGATGCCTACAGCTTACTGCAAACAATGGTGTCTTTTGGTCTAAACCCTTCTCTCCAAACCTACACTTTACTTCTCAGTTGTTGTACAGATGCACGATCGGCATTCGACATGGGATTTTGCCGTGAACTAATGGCCATTACAGGCCACCCAGCCCATTCATTTCTAGTTTCGCTGCCCTCACCCGAACCGACTGGCCAAAACGTTCTAGATCACACTAGCAAATTTCTAGATATGATGCACAGTGAGGATAGAGAGAGCAAGAGAGGGATTGTAGATGCAGTGGTGGATTTTCTTTGCAAATCGGGGCTTAAAGAAGAAGCCGGCTCCGTTTGGGATTCAGCTGTGCTGAAAAACATCTACCCAGATGCCGTCACGGAGAAGAGCTCTTGTTATTGGCTTATCAATCTGCACGTAATGTCCGACGGGACGGCAGTGACCGCCTTGTCCAGAACGCTGGCTCATTTCCGCAGGCAAATGATGAGGTCGGGGGTCGGACCTGTCCGGATCGACATTGTGACCGGCTGGGGGCGGCGGAGCCGGGTGACCGGAACTTCGCTTGTCCGGCAAGCCGTGCAAGAGCTTTTGAGTATTTTTAGCTTTCCTTTTCATAGTAAGAATGAAAATTCAGGATGTTTTGTGGGGTGTGGGGAGTCTCTCAACAGATGGCTGCTCCACTCTTGTGTGGAGAGAATGCATTTACTCTGA 2508 44.7 MLNAKKISNLSSGARSFFLSGARSNAADGSSCVFSEDETCVSQRHQFRNESFCTKQTPPLASNISAKVVTLAPIDVAKAVVHSSISSGKPDSVNQSSSPDSSLITADQFVKVSIAAVNFLSDLVNYKFQLSNGGGVLISAKNCMNDPLSNIKSSRVKHVKRENFSSVYPNSLSETAVSSKSRGNNCNGSKGKGDQSGSVRDLKQVRHTGTDSTFSDSSDRKYYSQKSKVHSDRSAPNCDTNLQSADVEYVSKRFYNVNAASAVVPKTKHFGNASHVLKNVSHILRGHKWGPSAEEALGKLNCSIDAFQANQILKQLPDHSVALGFFYWLKQQSGFKHDGHTYTTMVGILGRARQFGAIDRLLDQMVNDGCRPNVVTYNRLIHSYGRANYLKEAIYVFNQMGEAGCEPDRVTFCTLIDIHAKAGFLDVAMCMYRRMQEAGLTPDTFTYSVIINCLGKAGHLNAAHRIFCEMVDQGCVPNLVTYNIMITLQAKARNYQIALKLYRDMQNAGFQPDRVTYSIIMEVLGHCGNLEEAESLFVEMQLKNWVPDEPVYGLLVDLWGKSGNVEKAWEWYNAMLDAGLRPNVPTCNSMLSAFLRAHRLCDAYSLLQTMVSFGLNPSLQTYTLLLSCCTDARSAFDMGFCRELMAITGHPAHSFLVSLPSPEPTGQNVLDHTSKFLDMMHSEDRESKRGIVDAVVDFLCKSGLKEEAGSVWDSAVLKNIYPDAVTEKSSCYWLINLHVMSDGTAVTALSRTLAHFRRQMMRSGVGPVRIDIVTGWGRRSRVTGTSLVRQAVQELLSIFSFPFHSKNENSGCFVGCGESLNRWLLHSCVERMHLL 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7825551 7828058 + Bda023816.1 Bda06g00556 8138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00556 835 ProSiteProfiles Smr domain profile. 735 816 IPR002625 -
Bda06g00556 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Bda06g00556 835 Pfam PPR repeat 439 471 IPR002885 -
Bda06g00556 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Bda06g00556 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
Bda06g00556 835 SMART SMR_2 732 818 IPR002625 -
Bda06g00556 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Bda06g00556 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Bda06g00556 835 Gene3D Tetratricopeptide repeat domain 425 573 IPR011990 GO:0005515
Bda06g00556 835 SUPERFAMILY HCP-like 376 580 - -
Bda06g00556 835 Gene3D Tetratricopeptide repeat domain 574 638 IPR011990 GO:0005515
Bda06g00556 835 TIGRFAM PPR: pentatricopeptide repeat domain 480 513 IPR002885 -
Bda06g00556 835 TIGRFAM PPR: pentatricopeptide repeat domain 586 618 IPR002885 -
Bda06g00556 835 TIGRFAM PPR: pentatricopeptide repeat domain 445 478 IPR002885 -
Bda06g00556 835 TIGRFAM PPR: pentatricopeptide repeat domain 340 374 IPR002885 -
Bda06g00556 835 TIGRFAM PPR: pentatricopeptide repeat domain 410 444 IPR002885 -
Bda06g00556 835 TIGRFAM PPR: pentatricopeptide repeat domain 515 549 IPR002885 -
Bda06g00556 835 TIGRFAM PPR: pentatricopeptide repeat domain 375 408 IPR002885 -
Bda06g00556 835 TIGRFAM PPR: pentatricopeptide repeat domain 551 584 IPR002885 -
Bda06g00556 835 SUPERFAMILY SMR domain-like 733 813 IPR036063 -
Bda06g00556 835 MobiDBLite consensus disorder prediction 175 238 - -
Bda06g00556 835 Pfam PPR repeat 341 370 IPR002885 -
Bda06g00556 835 Pfam PPR repeat 551 580 IPR002885 -
Bda06g00556 835 Gene3D Tetratricopeptide repeat domain 292 423 IPR011990 GO:0005515
Bda06g00556 835 MobiDBLite consensus disorder prediction 175 194 - -
Bda06g00556 835 Pfam PPR repeat family 372 418 IPR002885 -
Bda06g00556 835 Pfam PPR repeat family 582 629 IPR002885 -
Bda06g00556 835 Pfam PPR repeat family 477 523 IPR002885 -
Bda06g00556 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Bda06g00556 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Bda06g00556 835 PANTHER OS03G0856100 PROTEIN 1 835 - -
Bda06g00556 835 PANTHER BNAA07G31720D PROTEIN 1 835 - -
Bda06g00556 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 583 617 IPR002885 -
Bda06g00556 835 Gene3D - 716 814 IPR036063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00556 - - - qsu:112027401 1125.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00236 Bda-Chr6:4157060 Bda06g00556 Bda-Chr6:7825551 1.46E-06 dispersed
Bda06g00556 Bda-Chr6:7825551 Bda06g01286 Bda-Chr6:43431892 4.75E-48 dispersed
Bda06g00556 Bda-Chr6:7825551 Bda06g01275 Bda-Chr6:43365065 9.77E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g487 . . Bda06g00556 . Bpe12g00560 . . . . . . . . . Sed12g1925 . . Bhi02g00357 Tan09g2169 Cmetu02g0830 . Hepe09g0143 . . Cla06g01612 Cam06g1790 Cec06g1840 Cco06g1847 Clacu06g1750 Cmu06g1694 Cre06g2511 Cone2ag0866 Cone16ag0141 Cone13ag0093 Cone19ag0096 . . . . Blo13g00026 Blo15g00297 . . Bpe07g00797 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01494 Csa01g00208 Chy02g02524 Cme02g01910
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009833 1 1 2 0 2 3 0 1 1 1 1 1 0 1 1 0 1 4 0 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00556 Bda_Chr06 FPKM 15.451992 18.06102 14.298913 14.566052 20.515659 21.195827 20.564253 17.179758 15.829404