Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00560 ATGTCGCAATATTCTTCTCTTCCTCCGATCTCCGACGACCACCCATCCTTCCCTGAACCCGTATCTCACCGAGATAACCACAGTCCCAATGATTATCTCGCCTTTCAAAACGAAAGCGCCACCGCCGCAACCCCTTGTAAACCCTCATTTCCGACGAGGACTAACCGTCCATCCCGTGCCTGTACTATCCGAGCTGCCGAGAGGCTCTTGGCGGCTCAGTCTGTGGTCGAACGGAAACCAAAGGGAAAAAAGGAGCTGCGGAGTGACCAGAATGAGGAGACGCCGCTGCATCTGCAACATCAACAATGCAGCAAGATAGTGACGCAGCTGGTGGAACCGCCTTCGCCTTCGCAATTGCCGAGGTGGAATCTCCGGTCAATGTGGGAATTGGCTTCTGTACTTAATTTTTTGAATGTTTTCAGGCCACTGTTGAATATCAATGTTGAGTTTTCGGCTGAAGAGTTTGAGTCTGCATTGATTTCACCGAACGACACTTTGAGTGATGTTCATATTCCATTGTTGAAGGCAATTCCTCCTGTTACACGAATGGCACTTACACGGGAAACCTGGGTGACTGTCTTATGCAGAAAATTGAGGGACTGGTGGTTTTGGGTAGCAGATGGAGATCTACCCCTTGTTGCTTCACATGGGGCTGAGGTTGAAGTGTATAGAACTCTTGATCCTGGGGTTCGTGTGGTGATCTTGAAAGCGCTCTGTGACATTCGTGTTGAGCAAGAAGATATTCGGAACTATATTGACAACTCACTCAAGCATGATGTCCAACTCTCGGCCTTTCGGAAAGAGCGTATTGGGGGTGATTCCTATGGAATTTTTTACTGGTATGAAGAGGATTCCTTAGTTGGCCATCGATTATATCGTGAGATTAGGAAAGTTGAGCTGAAAAAAACAAAGGCAAGAGGTTCACATATCCTTCCTAGTTCAACATACCAATGGGAAACTGTTGCAACAAGTTTTGATGAATTCCAGGATGTATCTGAAAAGCTATTTTCAAGTAAAAATAGATCGGAGGTTTCACTTGGTAAAAAACTGAAGATAGATATGCTTCCCGAGATTGAAAAGGTTCATAAGAGGAAAGAGAGGTTGCTGAAGAAACAACATAGACAAGCTCTTCTTCTCGATAATTTCATCAATATAGAAGATCTTGGTCCAGGCCGTTCCCTTCGTGATAGAAAACCTGTCACCTACACTTTTGATGATTACGATCGATCCATCAACGAGGCTATCAAGATAACCAATATCTACTCTCTTCAATGTGACAGACGAAAGCAGCCGTCCCCTGAAACTGATAATCGAAGGGAAGTCTTTGAGAAACCTGAGCCCTCCTCTAATGGAAAATGGATTGGTCCATCCTATGAGTCGGAAAATTTCACTTTCAGTGCTCTGTCTCCTGCATCGCTTGAATACGAAGAAACTGAAGAAGACCAAAAGATGGAAGATTTGGATCGCAGCAATCGGCGAAGACAGAGACCTCAAAGATATTCTGAGAATGAGTTTGTCGAGGCTGTATCGGACAATGAGGCAGATAGTGATGACGATATAGTTGGTGAAGCGATATATGATGAGGAGTATCTTCGGCAGCGTAAACAGAGAAAGAAAACATCGAGTAGCTCTGAAGGAGATGAGGAGTATCACTATGAGGAAGAAAATGGGGAAGATGAGGAGGAAGAAGAAGAAGAAGATGATGATGATGAATTTTCCCCAAGTGCAAGTGATGATAGTAACGAACGGCGAAAGCTACGAAAATTGCCCAGACACCCCCGGAGGAGGTTATCGAAATTAAGATCAGTCGATGAACTCCAATCTGGTTTAAGACGTAGTAACAGGGCAAGAAAAAACCGGATAAATTATAAACAGTATGAAATGTCAGAATCAGAACCGGAGTCTACAAAAGCTGAAAAGTCGAATGAGTCTGATCAACGCTCAGATGCAGAGGCCAGTGAAAATGGAGATTTTTCAACGGAGGAAAGTCCGGATTCCGATCGTGGTAATGAAGACGAGGAAAGAAAAAACGATCAGTCCATCAAGCTATACCCAGAGAAGGCAGGTACAAATAATCCGCCACTTGAAAAATCATCAAGTAGCCCAAGCGGAGACGAAACCAATGGTATACAAGGGAGACGTTTTCTCGACCTGAACGAGCTTGCCCCTGGGTCTGGTTTTGATGACGGACCTAACTCAGTTACAAAAGACGATGATCAAACAAACGACTTCTAA 2235 44.47 MSQYSSLPPISDDHPSFPEPVSHRDNHSPNDYLAFQNESATAATPCKPSFPTRTNRPSRACTIRAAERLLAAQSVVERKPKGKKELRSDQNEETPLHLQHQQCSKIVTQLVEPPSPSQLPRWNLRSMWELASVLNFLNVFRPLLNINVEFSAEEFESALISPNDTLSDVHIPLLKAIPPVTRMALTRETWVTVLCRKLRDWWFWVADGDLPLVASHGAEVEVYRTLDPGVRVVILKALCDIRVEQEDIRNYIDNSLKHDVQLSAFRKERIGGDSYGIFYWYEEDSLVGHRLYREIRKVELKKTKARGSHILPSSTYQWETVATSFDEFQDVSEKLFSSKNRSEVSLGKKLKIDMLPEIEKVHKRKERLLKKQHRQALLLDNFINIEDLGPGRSLRDRKPVTYTFDDYDRSINEAIKITNIYSLQCDRRKQPSPETDNRREVFEKPEPSSNGKWIGPSYESENFTFSALSPASLEYEETEEDQKMEDLDRSNRRRQRPQRYSENEFVEAVSDNEADSDDDIVGEAIYDEEYLRQRKQRKKTSSSSEGDEEYHYEEENGEDEEEEEEEDDDDEFSPSASDDSNERRKLRKLPRHPRRRLSKLRSVDELQSGLRRSNRARKNRINYKQYEMSESEPESTKAEKSNESDQRSDAEASENGDFSTEESPDSDRGNEDEERKNDQSIKLYPEKAGTNNPPLEKSSSSPSGDETNGIQGRRFLDLNELAPGSGFDDGPNSVTKDDDQTNDF 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7876566 7884119 + Bda023822.1 Bda06g00560 8142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00560 744 MobiDBLite consensus disorder prediction 620 654 - -
Bda06g00560 744 MobiDBLite consensus disorder prediction 75 98 - -
Bda06g00560 744 MobiDBLite consensus disorder prediction 29 58 - -
Bda06g00560 744 MobiDBLite consensus disorder prediction 484 501 - -
Bda06g00560 744 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 221 253 IPR028942 -
Bda06g00560 744 Pfam DDT domain 132 177 IPR018501 -
Bda06g00560 744 MobiDBLite consensus disorder prediction 471 744 - -
Bda06g00560 744 MobiDBLite consensus disorder prediction 77 94 - -
Bda06g00560 744 MobiDBLite consensus disorder prediction 692 708 - -
Bda06g00560 744 MobiDBLite consensus disorder prediction 508 524 - -
Bda06g00560 744 MobiDBLite consensus disorder prediction 661 682 - -
Bda06g00560 744 MobiDBLite consensus disorder prediction 1 58 - -
Bda06g00560 744 MobiDBLite consensus disorder prediction 598 612 - -
Bda06g00560 744 PANTHER REMODELING AND SPACING FACTOR 1 37 742 IPR028938 GO:0006355|GO:0031213
Bda06g00560 744 MobiDBLite consensus disorder prediction 525 547 - -
Bda06g00560 744 PANTHER DDT DOMAIN-CONTAINING PROTEIN DDR4 37 742 - -
Bda06g00560 744 MobiDBLite consensus disorder prediction 429 446 - -
Bda06g00560 744 MobiDBLite consensus disorder prediction 548 575 - -
Bda06g00560 744 MobiDBLite consensus disorder prediction 426 456 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00560 - - - csv:101216302 916.761
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00560 Bda15g00584 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00716 Bda-Chr1:34439843 Bda06g00560 Bda-Chr6:7876566 3.74E-79 dispersed
Bda06g00560 Bda-Chr6:7876566 Bda15g00588 Bda-Chr15:9084522 0 dispersed
Bda15g00584 Bda-Chr15:9052767 Bda06g00560 Bda-Chr6:7876566 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g478 . . Bda06g00560 Bda15g00584 Bpe12g00564 . . Bma12g01014 . . Cma10g00169 Cma11g00171 Car10g00158 Car11g00129 Sed08g0189 . Cpe04g01523 Bhi02g00367 Tan09g2175 Cmetu02g1218 . . . . Cla06g01619 Cam06g1798 Cec06g1848 Cco06g1856 Clacu06g1758 Cmu06g1702 Cre06g2520 Cone2ag0872 Cone16ag0138 . . . . . . Blo13g00029 Blo15g00292 . . Bpe07g00803 . . Bma08g00199 . Cmo10g00181 Cmo11g00137 . . . . . Cpe18g00813 . . . . . . . . . . . . . . Lsi06g01499 Csa01g00200 Chy02g02531 Cme02g01915
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003679 3 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16020 PF02791 DDT 8.10E-07 No_clan Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00560 Bda_Chr06 FPKM 99.925034 97.006142 95.21833 89.073624 110.842033 132.970856 107.812256 103.468086 105.696289