Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00561 ATGGGGAGAAGTGTTTGCTGCAAAAAGTTCAATGTTAAGAGGGATCTTTGGACCGACGAAAAAAATCTCGCTTATGCGTGCAAGCAGGGAAGGGCCAGCTGGAATGGTTTCGCGAAGAAAACAGGACTTAGAAGATGTGGGAAGAGCTGCAGGCTTAGATGGTCTCATCATCTTAAACCAGATTTTAACAACGATAGTTTTAATCTTCAAGAGGAGGAGTTGATCATCAGGCTTCATGCAACCATTGGAAGCAGGTGGACAATAATAGCTCAGCAACTTCCAGGAAGAACAGATAATGACGTGAAGAACTACTGGAATTCCAAGCTCAGGAAGAAGCTCACTGATATGGGCATTGATCCAGTCACTCACCGACCATTTTCTCAGGTCCTCGCCGACTATGGAAGCATCGGCGGCCTCCCAAAAACCACCAACCGAACCGCCTCTCTTTCTAAGGACTTCAAAAACCCTGTGTTCACCAAACCCGACCCGTTTCCGTATCTCAAAACCCACTCCTTCGACCTTCTTTCCGAGCTTCAAGCCGTAAAAATGGTGGCCGATGCCTCCAGCCTGGTATCTCAGTCTGCGTCTTCTTCTTCTTCTTCTAGTTGCTCCACTGCTTTTAGTTGGAGGGATTTTCTCCTCGAAGATGTAATTCTGCAGACTGATAATCCGAAAGACCAGGAAAATGGATCTGAACTCCCGGTGGTTTTACCGCCAAATGAGAAGACTGGAGAGGGAGGTGAAAACCAGTGCAGTAGCAATGAGGAAGAAGCTTCGTTCTTCTGCCATGGGAGTCGTTTTATCGAAGCTATGCTGGATCAAGACGACAAGATGTTTTTAGACTTTCGCGATCTCCTAGAAGAACCATTCTAG 873 46.62 MGRSVCCKKFNVKRDLWTDEKNLAYACKQGRASWNGFAKKTGLRRCGKSCRLRWSHHLKPDFNNDSFNLQEEELIIRLHATIGSRWTIIAQQLPGRTDNDVKNYWNSKLRKKLTDMGIDPVTHRPFSQVLADYGSIGGLPKTTNRTASLSKDFKNPVFTKPDPFPYLKTHSFDLLSELQAVKMVADASSLVSQSASSSSSSSCSTAFSWRDFLLEDVILQTDNPKDQENGSELPVVLPPNEKTGEGGENQCSSNEEEASFFCHGSRFIEAMLDQDDKMFLDFRDLLEEPF 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7890825 7892301 + Bda023823.1 Bda06g00561 8143

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00561 290 PANTHER F14D16.11-RELATED 1 290 - -
Bda06g00561 290 PANTHER F14D16.11-RELATED 1 290 - -
Bda06g00561 290 SMART sant 63 111 IPR001005 -
Bda06g00561 290 SMART sant 13 60 IPR001005 -
Bda06g00561 290 Gene3D - 65 124 - -
Bda06g00561 290 SUPERFAMILY Homeodomain-like 44 117 IPR009057 -
Bda06g00561 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Bda06g00561 290 Pfam Myb-like DNA-binding domain 66 107 IPR001005 -
Bda06g00561 290 Gene3D - 14 63 - -
Bda06g00561 290 ProSiteProfiles Myb-like domain profile. 9 58 IPR001005 -
Bda06g00561 290 SUPERFAMILY Homeodomain-like 8 62 IPR009057 -
Bda06g00561 290 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Bda06g00561 290 CDD SANT 66 109 IPR001005 -
Bda06g00561 290 MobiDBLite consensus disorder prediction 223 253 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00561 K09422 MYBP; transcription factor MYB, plant - vvi:104882320 288.115
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00561 Bda-Chr6:7890825 Bda07g01346 Bda-Chr7:16257804 6.87E-48 dispersed
Bda01g01249 Bda-Chr1:47915732 Bda06g00561 Bda-Chr6:7890825 5.56E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g475 . . Bda06g00561 . . . . Bma12g01016 . . Cma10g00168 . Car10g00157 . . . . Bhi02g00371 . . . . . . Cla06g01620 . . . . . . . . . . . . . . . . . . Bpe07g00805 . . . . Cmo10g00180 . . . . . . . . . . . . . . . . . . . . . Lsi06g01500 Csa01g00199 Chy02g02532 Cme02g01916
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013204 1 1 0 1 1 1 1 0 1 1 1 1 1 1 0 1 1 0 0 1 1 1 1 1 1 1 1 2 1 1 26
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16021 PF00249 Myb_DNA-binding 4.30E-11 CL0123 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00561 Bda_Chr06 FPKM 210.44487 212.845123 115.723267 108.723785 213.766907 251.869186 206.992096 159.514526 169.551636