Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00566 ATGGATCCTCCGCTCGTTAATGAGACTTCATTCTCGGCCGTCAACCCGTCCGTATACAGCTTGAATGATTCCAATGGTAAACTGATGAAATTGGGAGGCTCCAAAGCTGAAAATTGTCGCACAAAAGCTGAAGTAGAAGTTGAAACAAACTCGGCCGAAGGGACCAAGCCCGACGAACCAAGTTCCAAGCCGTCCGAGCCACCTAAAGATTATATTCACGTGAGAGCGAGAAGAGGCCAAGCAACCGATAGCCACAGTCTAGGAGAAAGAGCGAGAAGAGAGAAAATCAGCGAGAGAATGAGAATTCTCCAAGAGTTGGTGCCGGGATGTAACAAGGTCATAGGGAAGGCACACGTTCTCGATGAGATTATCAATTACATTCAATCTCTGCAGCGTCAAGTCGAGTTCCTGTCCATGAAGCTCGAAGCAGTTAATTCAAGAATGAACGAGATAGAAGGCCATACTACCAAGGATAGTGGAGTGCAGCCATTTGATGGTGCAGGAATGGTATACGGGTGGCAGGCAATACCTAGAGAGTATGGTCAAGGCTTACAGCATGAATGGTTGCCTATGCAAATCGGCGGTGGCTTTGAAAGAGCAAATTAA 606 47.03 MDPPLVNETSFSAVNPSVYSLNDSNGKLMKLGGSKAENCRTKAEVEVETNSAEGTKPDEPSSKPSEPPKDYIHVRARRGQATDSHSLGERARREKISERMRILQELVPGCNKVIGKAHVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNEIEGHTTKDSGVQPFDGAGMVYGWQAIPREYGQGLQHEWLPMQIGGGFERAN 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7945300 7946795 + Bda023828.1 Bda06g00566 8148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00566 201 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 149 IPR036638 GO:0046983
Bda06g00566 201 Pfam Helix-loop-helix DNA-binding domain 84 131 IPR011598 GO:0046983
Bda06g00566 201 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 80 130 IPR011598 GO:0046983
Bda06g00566 201 SMART finulus 86 136 IPR011598 GO:0046983
Bda06g00566 201 MobiDBLite consensus disorder prediction 39 70 - -
Bda06g00566 201 Gene3D - 77 154 IPR036638 GO:0046983
Bda06g00566 201 CDD bHLH_AtBPE_like 70 149 - -
Bda06g00566 201 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 20 200 IPR024097 GO:0006355
Bda06g00566 201 Coils Coil 127 147 - -
Bda06g00566 201 PANTHER BNAC05G07950D PROTEIN 20 200 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda06g00566 Bda15g00591 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00566 Bda-Chr6:7945300 Bda10g00520 Bda-Chr10:38831959 1.93E-47 dispersed
Bda01g02247 Bda-Chr1:58264061 Bda06g00566 Bda-Chr6:7945300 1.38E-52 wgd
Bda11g01242 Bda-Chr11:12947673 Bda06g00566 Bda-Chr6:7945300 7.77E-45 wgd
Bda15g00591 Bda-Chr15:9105510 Bda06g00566 Bda-Chr6:7945300 3.10E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16022 PF00010 HLH 1.10E-07 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00566 - - cpap:110806643 249.595