Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00568 ATGGAGCTTCAGAATACAGTGAAGGAAGTTGCTGATAATTTGCTACATGATTCTACTAGCAATCTGGAGACGTTGATATTTTGTTCTCAGACCCTTAGAAGCAAGGTACAACGAGATTTTGAAGAGCTACCTTCAGAAGCATTTCGCCCGTTACGTGATTCATTGAATAACTTATTGAGGAAGTTTCACAAGGGACCTCCTAAAGTTAGAACTCAGATTAGCATTGCTGTCGCTGCATTGGCTGTACATGTTCCTGCGGAAGATTGGGGAGATGGTGGAATAGTGAATTGGCTTCGAGATGAGATGAATTCACATCCAGAATATGTTCCTGGATTTTTGGAGTTGTTAACTGTTTTGCCAGAGGAAGTGTATAACTATAAGATAGCAGCTCGTCCAGATAGACGGCGTCAATTTGAAAAAGAGCTCACAACACAAATGGAAGTTGCTTTTAACATTTTGACAGCATGTTTGCATATTAATGAGCTTAAGGAGCAGGTTCTTGATGCATTTGCTTCTTGGCTTCGTTTAAAGCATGGGTTCCCGGGGTCTGTGCTTGCTTCTCATCCATTGGTGCTCACTGCTCTCACAAGCTTAAATTCAGAGATAATTTCAGAGGCGTCAGTTAATGTTATATCTGAATTGATACACTACTCAGCATCTGGAAATTCTGGTGGTGTTCCTGTTCACATGCCCTTAATTCAGGCCATTGTGCCACAAGTTATGAATTTAAAGGTGCAGCTTCGAGATTCTTCAAAGGATGAAGAAGATGTGAAGGCCATTGCTCGCTTATTTGCTGACATGGGTGATTCATATGTTGAATTGATTGCATATGGTTCTGATGAATCAATGCTTATTGTCCATGCACTTTTGGAAGTTTCTTCACACCCAGAATATGATATTGCCTCAATGACATTCAATTTTTGGCATAGTCTTCAGGTCAACATGACCAAGAGAGATGCGTATATTTCTTTTGGTGATGATTCTTCTGTTGAAACTGAGAGGAATAGAAGGTTGCATATATTTCGCCCGGTGTATGAGTCCCTTGTTTCCTTGGTTAGTTTCCGAGTTCAATATCCTAAAGATTATCAAGACTTATCTTATGAGGACCTCAAAGAGTTTAAGCAAACAAGATATGCCGTTGCAGATGTTTTAATTGACGCTGCCTCTGTTTTGGGAGGTGATCTGACGTTGAAAATTCTCTATGTGAAGCTTGTGGAGGCTATTGCTAGTTGTGGCAATGATGAACATAGTGAATGGCGTCCAGCAGAGGCTGCTTTATTTTGTATTCGAGCGATATCAAAATATGTTTCATACAATGAATCTGAAGTAATGCCTAAGGTCATGGATTTACTTGCAAAACTACCTCGACAAGCCCAACTGCTTCAGACAGTCTGTTTAACAGTTGGGGCATATTCAAAATGGTTTGATGCTTCATCAAGTGGATTGGCTGTATTACCTTCTGTAATAAATATCCTCATGAGTGGTATGGGAACATCAGAAGATTCTGCTGCTGCTGCAGCTTTGGCATTCAGACACATATGTGATGATTGCCGGAGAAAACTTTGTGGATCGTTGGATGGTCTCTTCCACATTTACAATAGTGCTGTTAATGGGGAAAGTAGTTTTAAAATATCTGCTGAGGACTCATTGCATCTGGTGGAGGCATTAAGCATGGTTATCACCGAACTTTCTCCAGACAATGCCAAGAGAGCAATGGAAGCATTGTGTGTGCCAGTTGTCACTCCTCTGCAGGAAATTGTCAATCAAGGCCCCGACTTATTAAATAAGAAATCTGCTCATGAGTTAACAGTTCATATTGATCGGTTTGCATACATCTTCAGATATGTAAATCATCCTGAAGCGGTGGCAGATGCAATTCAAAGGCTTTGGCCAATTTTCAAAGCCATCTTTGATCTCCGTGCATGGGACATGCGAACAATGGAGTCTCTTTGTCGAGCATGCAAATATGCTGTGAGAACCTCTGGAAGATTCATGGGTATTACCATTGGAGCTATGTTAGAAGAGATTCAAGGCCTCTTTAGACAGCATCATCAACCTTGTTTTCTTTATCTTTCCAGTGAAGTTATTAAAATATTTGGTTCTGATCCAACTTGTGCAAGCTATTTACAAAATTTGATTGAAGCACTATTCATGCACACCACGTTGCTACTGACAAATATTCAGGAATTTACAGCTCGACCGGACATTGCGGATGATTGCTTTTTGTTGGCATCAAGATGTATACGCTACTGTCCTCAATTATTTATTCCATCTGCAGTGTTTCCATCATTAGTAGATTGCTCAATGATTGGAATCACAGTCCAGCATAGGGAGGCCTGCAATTCTATATTGACCTTCTTAGGAGATATTTTTGATCTAACAAATTCTGGCGAAAGAGAACAGTACTTGCTCATCAGAGATACAGTAATCAAACCTCGAGGTCCAGTCATCACAAGAATTTTGGTAGCATCATTAACAGGAGCTTTACCTAGTTCTCGATTAGAACCGGTTACATACACTCTATTGGCTCTAACTCGAACTTTTGGCCTGGAAGCATTTGAGTGGGCAAAGGCAAGTGTTTCGCTAATTCCATTGACTGCAGTCACGGAAAAGGAGCGTGTGAGATTTTTGAAAGCATTGGCTGATGCAGCCTCCGGATTTGATATAAACACACTAACGAATCCAATCGAAGAGCTATCAGATGTTTGCCGACGAAATCGAAATGTTCAAGAGATTGTGCAAGGAGCTTTAAGGCCTCTCGAGTTGAACTTGGTACCTGTATCATAG 2787 40.69 MELQNTVKEVADNLLHDSTSNLETLIFCSQTLRSKVQRDFEELPSEAFRPLRDSLNNLLRKFHKGPPKVRTQISIAVAALAVHVPAEDWGDGGIVNWLRDEMNSHPEYVPGFLELLTVLPEEVYNYKIAARPDRRRQFEKELTTQMEVAFNILTACLHINELKEQVLDAFASWLRLKHGFPGSVLASHPLVLTALTSLNSEIISEASVNVISELIHYSASGNSGGVPVHMPLIQAIVPQVMNLKVQLRDSSKDEEDVKAIARLFADMGDSYVELIAYGSDESMLIVHALLEVSSHPEYDIASMTFNFWHSLQVNMTKRDAYISFGDDSSVETERNRRLHIFRPVYESLVSLVSFRVQYPKDYQDLSYEDLKEFKQTRYAVADVLIDAASVLGGDLTLKILYVKLVEAIASCGNDEHSEWRPAEAALFCIRAISKYVSYNESEVMPKVMDLLAKLPRQAQLLQTVCLTVGAYSKWFDASSSGLAVLPSVINILMSGMGTSEDSAAAAALAFRHICDDCRRKLCGSLDGLFHIYNSAVNGESSFKISAEDSLHLVEALSMVITELSPDNAKRAMEALCVPVVTPLQEIVNQGPDLLNKKSAHELTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDLRAWDMRTMESLCRACKYAVRTSGRFMGITIGAMLEEIQGLFRQHHQPCFLYLSSEVIKIFGSDPTCASYLQNLIEALFMHTTLLLTNIQEFTARPDIADDCFLLASRCIRYCPQLFIPSAVFPSLVDCSMIGITVQHREACNSILTFLGDIFDLTNSGEREQYLLIRDTVIKPRGPVITRILVASLTGALPSSRLEPVTYTLLALTRTFGLEAFEWAKASVSLIPLTAVTEKERVRFLKALADAASGFDINTLTNPIEELSDVCRRNRNVQEIVQGALRPLELNLVPVS 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7954592 7966093 + Bda023830.1 Bda06g00568 8150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00568 928 Pfam Exportin 1-like protein 66 211 IPR013598 -
Bda06g00568 928 PANTHER TRANSPORTIN 3 AND IMPORTIN 13 8 924 - -
Bda06g00568 928 SUPERFAMILY ARM repeat 11 803 IPR016024 -
Bda06g00568 928 Gene3D - 2 902 IPR011989 -
Bda06g00568 928 PANTHER TRANSPORTIN MOS14 8 924 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00568 K15436 TRPO3, MTR10; transportin-3 - csv:101215103 1587.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01036 Bda-Chr1:44264328 Bda06g00568 Bda-Chr6:7954592 1.24E-27 dispersed
Bda01g01040 Bda-Chr1:44428715 Bda06g00568 Bda-Chr6:7954592 2.79E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g421 . . Bda06g00568 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe07g00810 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008466 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00568 Bda_Chr06 FPKM 30.49365 36.857296 45.930157 45.94363 24.020863 21.882048 24.315584 41.037319 43.702431