Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00586 ATGGGTCGACTCGAGTCTGCGTTGAATAATCCGACCTCATCGATGAAGGCGAAAGAGATCCGGAAGTATCTCCATGGGAAAAAACTCATTCTTGGTGTTGATGATATGGACATATTCAAAGGTATTGGCTTGAAGTTATTAGCTTTCGAGCAACTCTTCTATCGGAATCCGGATTTGCGAAACAAAATCGTGCTCGTGCAGATCGTCAATCCTGCACGAAGCACTGGAAAAGACGTTGAAGAAGCTGAAAAGGAGACTTACTCGATAACTGAGAGGATCAACATGGCTTTTGGCTCCCCTGGCTATTTACCGGTCATCTTAATCGATCGTCCTATTCCCTTCCAAGAAAAGACGACATATTATGCCCTGGCAGAGTGTTGTATCGTGAATGCCGTAAGGGACGGTATGAACTTGATTCCGTACGAATATATTGTTTGCAGACAAGGAACACCGAAAATGGACAAAGCATTAGACATCGATTCGAATTTGCCTCGGACGAGTACACTTGTCGTGTCGGAGTTCATTGGTTGCTCGCCATCTTTGAGTGGAGCCATCAGAGTGAACCCTTGGGATGTCGATGCAGTTGCTGATGCTCTAAATATGGCCATCTCCATGCCTAATTTGGAGAAGCAGTTGAGACATGAAAAGCATTACCGTTATGTTAGCTCTCACGATGTCGCTTTTTGGGCTCGGAGTTTTATGCAAGATTTGGAGCGAGCTTGCAAAGATCATTACAGCAAACGTTGTTGGGGAATCGGGTTCGGTTTGGGTTTCAGAATATTGTCCCTTTCTCCGAGTTTTAGGAAGCTTTCTATCGACCATATTGTCTCTGCTTATAAGCGGACTAGTAGGAGAGTGATGTTTTTGGATTACGACGGGACCGTAGTTCCTCAATCGTCGATCGAGAAAAGTCCATCTCCGGAAGTCATTTCCGTGCTGAATAATCTATGTGCAGACCCAAAAAACACAGTGTTTATCGTAAGTGGGAGGGAGAAAAGCTCTCTCGATTCATGGTTTGTTTCGTGCGAGAATCTCGGTATAGCAGCGGAACATGGATTCTTCTTAAGGTGGAGTAAGAAGTCGAGATGGGAAGTCTGTGCTGGAACAGCTGATTTTGCTTGGAAAAGGATTGCCGAACCGGTGATGAAATTATACACCGAGGCAACAGACGGGTCGTATATCGAGACCAAGGAAAGTGCATTGGTCTGGCACCATCGAGATGCCGACCCTGATTTCGGGTCGTGCCAAGCAATGGAGCTCTTGGACCATCTTGAAAATGTGCTTGCAAATGAGCCCGTCGTCGTGAAGAGAGGCCAGCATATCGTCGAAGTAAAGCCACAGGGAGTGACGAAAGGATTTGTCGCGGAGAAAGTACTGTCTGGAATGATTGGCAAGGAGAACCCTCCCGATTTCGTGATGTGTATTGGCGACGATAGATCAGATGAAGACATGTTCGAGAGCATATTAAGCACTTCCTACAATTCTGCACCCGAGATCTTTGCATGCACTGTCGGCCAGAAACCGAGCAAGGCCAAATACTATCTCGACGATACTTTGGATGTGGTGAAACTGCTTCAGGGTCTCTCCATCGCATCCAATCGGAAGTTGAGGTGGAGCTCGGAAGCTCAAGTTGTCTTCACCAATGCCGTTTGA 1653 46.46 MGRLESALNNPTSSMKAKEIRKYLHGKKLILGVDDMDIFKGIGLKLLAFEQLFYRNPDLRNKIVLVQIVNPARSTGKDVEEAEKETYSITERINMAFGSPGYLPVILIDRPIPFQEKTTYYALAECCIVNAVRDGMNLIPYEYIVCRQGTPKMDKALDIDSNLPRTSTLVVSEFIGCSPSLSGAIRVNPWDVDAVADALNMAISMPNLEKQLRHEKHYRYVSSHDVAFWARSFMQDLERACKDHYSKRCWGIGFGLGFRILSLSPSFRKLSIDHIVSAYKRTSRRVMFLDYDGTVVPQSSIEKSPSPEVISVLNNLCADPKNTVFIVSGREKSSLDSWFVSCENLGIAAEHGFFLRWSKKSRWEVCAGTADFAWKRIAEPVMKLYTEATDGSYIETKESALVWHHRDADPDFGSCQAMELLDHLENVLANEPVVVKRGQHIVEVKPQGVTKGFVAEKVLSGMIGKENPPDFVMCIGDDRSDEDMFESILSTSYNSAPEIFACTVGQKPSKAKYYLDDTLDVVKLLQGLSIASNRKLRWSSEAQVVFTNAV 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8106162 8107978 - Bda023850.1 Bda06g00586 8168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00586 550 Pfam Trehalose-phosphatase 288 517 IPR003337 GO:0003824|GO:0005992
Bda06g00586 550 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 287 486 IPR006379 -
Bda06g00586 550 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 4 242 - -
Bda06g00586 550 Gene3D - 284 409 IPR023214 -
Bda06g00586 550 Gene3D - 412 542 IPR023214 -
Bda06g00586 550 SUPERFAMILY HAD-like 285 527 IPR036412 -
Bda06g00586 550 TIGRFAM T6PP: trehalose-phosphatase 284 527 IPR003337 GO:0003824|GO:0005992
Bda06g00586 550 Gene3D Glycogen Phosphorylase B; 2 222 - -
Bda06g00586 550 CDD HAD_TPP 286 523 - -
Bda06g00586 550 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 1 540 - -
Bda06g00586 550 Pfam Glycosyltransferase family 20 2 238 IPR001830 GO:0003824|GO:0005992
Bda06g00586 550 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 540 IPR001830 GO:0003824|GO:0005992
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00586 K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] - tcc:18603871 884.789
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00586 Bda-Chr6:8106162 Bda11g00014 Bda-Chr11:210111 0 dispersed
Bda06g00586 Bda-Chr6:8106162 Bda07g01593 Bda-Chr7:29562641 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g717 . . Bda06g00586 . . . . . . . Cma10g00135 Cma11g00105 Car10g00127 . Sed08g0139 . Cpe04g01547 Bhi02g00424 Tan09g2229 Cmetu02g0557 . Hepe09g0190 . . Cla06g01651 Cam06g1835 Cec06g1886 Cco06g1891 Clacu06g1795 Cmu06g1737 Cre06g2555 . . . . . . . . . Blo15g00275 . . Bpe07g00827 . . . . Cmo10g00141 Cmo11g00107 . . . . . Cpe18g00836 . . . . . . . . . . . . . . Lsi06g01540 Csa01g00164 Chy02g02567 Cme02g01956
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda07g00964 . 1 849 Trehalose Biosynthesis Gene Families AT1G06410 74.2 0.0e+00 1328.2
Bda08g00635 BCT 1 852 Trehalose Biosynthesis Gene Families AT1G06410 65.0 0.0e+00 1146.0
Bda07g01593 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.6 0.0e+00 1088.9
Bda11g00014 . 1 839 Trehalose Biosynthesis Gene Families AT1G06410 60.3 5.3e-311 1063.5
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT1G06410 64.1 1.5e-294 1008.8
Bda06g00586 . 1 542 Trehalose Biosynthesis Gene Families AT1G06410 59.9 9.3e-191 664.1
Bda10g01016 . 81 491 Trehalose Biosynthesis Gene Families AT1G06410 57.7 1.1e-143 507.7
Bda07g00245 . 87 698 Trehalose Biosynthesis Gene Families AT1G16980 64.6 6.2e-243 837.0
Bda09g00542 . 87 698 Trehalose Biosynthesis Gene Families AT1G16980 63.8 2.6e-241 831.6
Bda07g01593 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 75.1 0.0e+00 1365.9
Bda11g00014 . 1 845 Trehalose Biosynthesis Gene Families AT1G23870 65.7 0.0e+00 1181.4
Bda08g00635 BCT 1 854 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1101.7
Bda07g00964 . 1 857 Trehalose Biosynthesis Gene Families AT1G23870 60.5 0.0e+00 1090.1
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT1G23870 62.3 6.6e-285 976.9
Bda06g00586 . 1 533 Trehalose Biosynthesis Gene Families AT1G23870 71.3 1.0e-229 793.5
Bda10g01016 . 83 508 Trehalose Biosynthesis Gene Families AT1G23870 67.9 4.3e-183 638.6
Bda07g01593 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 74.2 0.0e+00 1351.3
Bda11g00014 . 1 841 Trehalose Biosynthesis Gene Families AT1G60140 63.0 0.0e+00 1131.7
Bda08g00635 BCT 1 851 Trehalose Biosynthesis Gene Families AT1G60140 59.8 1.2e-310 1062.4
Bda07g00964 . 1 857 Trehalose Biosynthesis Gene Families AT1G60140 59.5 2.6e-310 1061.2
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT1G60140 59.3 1.4e-274 942.6
Bda06g00586 . 1 550 Trehalose Biosynthesis Gene Families AT1G60140 66.8 2.1e-222 769.2
Bda10g01016 . 82 509 Trehalose Biosynthesis Gene Families AT1G60140 64.8 9.1e-178 620.9
Bda08g00635 BCT 1 853 Trehalose Biosynthesis Gene Families AT1G68020 69.5 0.0e+00 1252.3
Bda07g00964 . 1 857 Trehalose Biosynthesis Gene Families AT1G68020 62.6 0.0e+00 1133.2
Bda07g01593 . 1 842 Trehalose Biosynthesis Gene Families AT1G68020 64.7 0.0e+00 1129.4
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT1G68020 70.9 0.0e+00 1119.4
Bda11g00014 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.5 0.0e+00 1116.3
Bda06g00586 . 1 534 Trehalose Biosynthesis Gene Families AT1G68020 62.7 3.8e-200 695.3
Bda10g01016 . 81 491 Trehalose Biosynthesis Gene Families AT1G68020 59.6 2.8e-150 529.6
Bda07g01593 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.6 0.0e+00 1207.2
Bda11g00014 . 1 838 Trehalose Biosynthesis Gene Families AT1G70290 60.9 4.4e-307 1050.4
Bda07g00964 . 1 858 Trehalose Biosynthesis Gene Families AT1G70290 57.2 1.3e-290 995.7
Bda08g00635 BCT 1 866 Trehalose Biosynthesis Gene Families AT1G70290 56.3 6.2e-285 976.9
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT1G70290 56.7 1.0e-247 853.2
Bda06g00586 . 1 550 Trehalose Biosynthesis Gene Families AT1G70290 68.1 1.4e-223 773.1
Bda10g01016 . 82 508 Trehalose Biosynthesis Gene Families AT1G70290 65.1 1.7e-173 606.7
Bda07g00245 . 1 933 Trehalose Biosynthesis Gene Families AT1G78580 78.5 0.0e+00 1463.0
Bda09g00542 . 1 927 Trehalose Biosynthesis Gene Families AT1G78580 78.3 0.0e+00 1459.1
Bda11g00014 . 11 838 Trehalose Biosynthesis Gene Families AT2G18700 68.8 0.0e+00 1173.3
Bda07g01593 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 63.2 0.0e+00 1075.1
Bda08g00635 BCT 25 852 Trehalose Biosynthesis Gene Families AT2G18700 59.4 1.4e-295 1012.3
Bda07g00964 . 1 847 Trehalose Biosynthesis Gene Families AT2G18700 56.0 4.9e-288 987.3
Bda06g01263 BCT 41 714 Trehalose Biosynthesis Gene Families AT2G18700 63.4 1.4e-266 916.0
Bda06g00586 . 1 533 Trehalose Biosynthesis Gene Families AT2G18700 58.6 4.1e-186 648.7
Bda10g01016 . 74 491 Trehalose Biosynthesis Gene Families AT2G18700 56.9 9.2e-146 514.6
Bda08g00635 BCT 1 848 Trehalose Biosynthesis Gene Families AT4G17770 77.7 0.0e+00 1362.4
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT4G17770 76.3 0.0e+00 1189.1
Bda07g00964 . 1 857 Trehalose Biosynthesis Gene Families AT4G17770 64.8 0.0e+00 1166.8
Bda07g01593 . 1 840 Trehalose Biosynthesis Gene Families AT4G17770 65.4 0.0e+00 1155.2
Bda11g00014 . 1 835 Trehalose Biosynthesis Gene Families AT4G17770 61.9 0.0e+00 1094.3
Bda06g00586 . 3 529 Trehalose Biosynthesis Gene Families AT4G17770 61.0 2.9e-200 695.7
Bda10g01016 . 81 489 Trehalose Biosynthesis Gene Families AT4G17770 58.6 4.1e-154 542.3
Bda07g00245 . 95 927 Trehalose Biosynthesis Gene Families AT4G27550 62.7 4.4e-304 1040.4
Bda09g00542 . 95 926 Trehalose Biosynthesis Gene Families AT4G27550 62.5 2.9e-303 1037.7
Bda07g00245 . 1 933 Trehalose Biosynthesis Gene Families AT1G78580 78.5 0.0e+00 1463.0
Bda09g00542 . 1 927 Trehalose Biosynthesis Gene Families AT1G78580 78.3 0.0e+00 1459.1
Bda07g00245 . 87 698 Trehalose Biosynthesis Gene Families AT1G16980 64.6 6.2e-243 837.0
Bda09g00542 . 87 698 Trehalose Biosynthesis Gene Families AT1G16980 63.8 2.6e-241 831.6
Bda07g00245 . 95 623 Trehalose Biosynthesis Gene Families AT1G17000 62.4 1.1e-193 673.7
Bda09g00542 . 95 623 Trehalose Biosynthesis Gene Families AT1G17000 61.4 7.7e-192 667.5
Bda07g00245 . 95 927 Trehalose Biosynthesis Gene Families AT4G27550 62.7 4.4e-304 1040.4
Bda09g00542 . 95 926 Trehalose Biosynthesis Gene Families AT4G27550 62.5 2.9e-303 1037.7
Bda08g00635 BCT 1 848 Trehalose Biosynthesis Gene Families AT4G17770 77.7 0.0e+00 1362.4
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT4G17770 76.3 0.0e+00 1189.1
Bda07g00964 . 1 857 Trehalose Biosynthesis Gene Families AT4G17770 64.8 0.0e+00 1166.8
Bda07g01593 . 1 840 Trehalose Biosynthesis Gene Families AT4G17770 65.4 0.0e+00 1155.2
Bda11g00014 . 1 835 Trehalose Biosynthesis Gene Families AT4G17770 61.9 0.0e+00 1094.3
Bda06g00586 . 3 529 Trehalose Biosynthesis Gene Families AT4G17770 61.0 2.9e-200 695.7
Bda10g01016 . 81 489 Trehalose Biosynthesis Gene Families AT4G17770 58.6 4.1e-154 542.3
Bda08g00635 BCT 1 853 Trehalose Biosynthesis Gene Families AT1G68020 69.5 0.0e+00 1252.3
Bda07g00964 . 1 857 Trehalose Biosynthesis Gene Families AT1G68020 62.6 0.0e+00 1133.2
Bda07g01593 . 1 842 Trehalose Biosynthesis Gene Families AT1G68020 64.7 0.0e+00 1129.4
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT1G68020 70.9 0.0e+00 1119.4
Bda11g00014 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.5 0.0e+00 1116.3
Bda06g00586 . 1 534 Trehalose Biosynthesis Gene Families AT1G68020 62.7 3.8e-200 695.3
Bda10g01016 . 81 491 Trehalose Biosynthesis Gene Families AT1G68020 59.6 2.8e-150 529.6
Bda07g00964 . 1 849 Trehalose Biosynthesis Gene Families AT1G06410 74.2 0.0e+00 1328.2
Bda08g00635 BCT 1 852 Trehalose Biosynthesis Gene Families AT1G06410 65.0 0.0e+00 1146.0
Bda07g01593 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.6 0.0e+00 1088.9
Bda11g00014 . 1 839 Trehalose Biosynthesis Gene Families AT1G06410 60.3 5.3e-311 1063.5
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT1G06410 64.1 1.5e-294 1008.8
Bda06g00586 . 1 542 Trehalose Biosynthesis Gene Families AT1G06410 59.9 9.3e-191 664.1
Bda10g01016 . 81 491 Trehalose Biosynthesis Gene Families AT1G06410 57.7 1.1e-143 507.7
Bda07g01593 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.6 0.0e+00 1207.2
Bda11g00014 . 1 838 Trehalose Biosynthesis Gene Families AT1G70290 60.9 4.4e-307 1050.4
Bda07g00964 . 1 858 Trehalose Biosynthesis Gene Families AT1G70290 57.2 1.3e-290 995.7
Bda08g00635 BCT 1 866 Trehalose Biosynthesis Gene Families AT1G70290 56.3 6.2e-285 976.9
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT1G70290 56.7 1.0e-247 853.2
Bda06g00586 . 1 550 Trehalose Biosynthesis Gene Families AT1G70290 68.1 1.4e-223 773.1
Bda10g01016 . 82 508 Trehalose Biosynthesis Gene Families AT1G70290 65.1 1.7e-173 606.7
Bda07g01593 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 75.1 0.0e+00 1365.9
Bda11g00014 . 1 845 Trehalose Biosynthesis Gene Families AT1G23870 65.7 0.0e+00 1181.4
Bda08g00635 BCT 1 854 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1101.7
Bda07g00964 . 1 857 Trehalose Biosynthesis Gene Families AT1G23870 60.5 0.0e+00 1090.1
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT1G23870 62.3 6.6e-285 976.9
Bda06g00586 . 1 533 Trehalose Biosynthesis Gene Families AT1G23870 71.3 1.0e-229 793.5
Bda10g01016 . 83 508 Trehalose Biosynthesis Gene Families AT1G23870 67.9 4.3e-183 638.6
Bda07g01593 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 74.2 0.0e+00 1351.3
Bda11g00014 . 1 841 Trehalose Biosynthesis Gene Families AT1G60140 63.0 0.0e+00 1131.7
Bda08g00635 BCT 1 851 Trehalose Biosynthesis Gene Families AT1G60140 59.8 1.2e-310 1062.4
Bda07g00964 . 1 857 Trehalose Biosynthesis Gene Families AT1G60140 59.5 2.6e-310 1061.2
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT1G60140 59.3 1.4e-274 942.6
Bda06g00586 . 1 550 Trehalose Biosynthesis Gene Families AT1G60140 66.8 2.1e-222 769.2
Bda10g01016 . 82 509 Trehalose Biosynthesis Gene Families AT1G60140 64.8 9.1e-178 620.9
Bda11g00014 . 11 838 Trehalose Biosynthesis Gene Families AT2G18700 68.8 0.0e+00 1173.3
Bda07g01593 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 63.2 0.0e+00 1075.1
Bda08g00635 BCT 25 852 Trehalose Biosynthesis Gene Families AT2G18700 59.4 1.4e-295 1012.3
Bda07g00964 . 1 847 Trehalose Biosynthesis Gene Families AT2G18700 56.0 4.9e-288 987.3
Bda06g01263 BCT 41 714 Trehalose Biosynthesis Gene Families AT2G18700 63.4 1.4e-266 916.0
Bda06g00586 . 1 533 Trehalose Biosynthesis Gene Families AT2G18700 58.6 4.1e-186 648.7
Bda10g01016 . 74 491 Trehalose Biosynthesis Gene Families AT2G18700 56.9 9.2e-146 514.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000820 3 9 5 4 5 2 1 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 1 2 6 7 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00586 Bda_Chr06 FPKM 2.551783 2.038377 2.737486 1.97373 4.41927 1.603527 3.1903 1.827004 2.514849