Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00593 GAGAACATAGAAATGTCTGGAGTTTCTAACGACGCAATAAACGAAGCGGTAGAGGCCCAAAATTTCACATCTTTTAAGGAAGTTTCGGTGGAAAATAACTCACAGAAGGGTATTTTGAATCCGCAAAGCCCTGCATGTCCAACTGTCCATGCCCCAAATGACGGGTTGATTGACACCTCCATTGATAAGCTGTATGAAAATTTATGTGATTTGCAGAGTTCTGAACAATCCACTTCGAGGCATAGCTTTGGATCAGATGGCGAGGAGTCTCTGATTGATTCAGAGCTGCACCATCTTGTTGGAGGAGACGTGAGGGAGGTAGAGATGATAAGGGAAGAAGCAGAAGAGACAAAGACACCGGATGGAAACACACTTTTCATAGAGAAGAGTTCTTCTTTGGATAAGATGTCAGCAAAGATGGATAAAAACCAATCTGTGAGTGCAAAATCTGTTTCATCAAGCCCCTTGAGAAATGAAAAGAATCTGAAAAAACAGAATCATGTCAAAAAACAGAAAAACTCATTGTCTGGAGGTTTGAGATCGAAGAACGGAATCGAAGACTCAGTCATATCGGGTCTGGATAATCCTGATCTAGGACCTTATTTACTCAAACAAGCAAGGAATTTGGTTTCTTCTGGAGAAAACCTGCAAAAGGCTCTTGAACTGGCTCTACGAGCTGTGAAATCATTCGAATCATGTGCAGATAAGAAAAACAGTTTAGAATTCGTCATGTGTTTGCACGCCACAGCAGCAATCTACTGCAGCTTAGGACGCTATTCCGAGGCAATTCCTCTTTTGGAATACTCCATTGAGATTCCATCTCTCGAAGAGAGCAAAGAGCGAGCTCTAGCTAATTTTGCCGGTCAAATGCAGTTAGGCGATACATATGCAATGTTGGGTCAGCTCGATAATTTGATATCTTGTTATACGAAGGGATTGGAAATCCAGAAACAGGTTTTAGGAGGAAATGATATTGGAGTTAGTATGACTTGTAGGTATTTATCAGAAGCACATGTTCAAGCTTTGCAATTTGTCGAAGCGGAAAAGATCTGTCAAATGGCTCTTGATATTCATAAACAGAATGGAGCAATAGGTTCTCTCGAAGAAGCTGCAGATAGGAGACTAATGGGTCTAATTTGTGAGACAAAGGGAGACCATGAAGCTGCTCTTGAGCATCTGGTTTTGGCTAGCATGGCTATGGTGGCAAATGGCCAGGAAATGGAGGTAGCTTCTGTTGATTGCAGTATTGGCGATATATATTTATCGTTATCTCAATATGGCGAGGCCGTTTTCGCTTATCAGAAAGCGCTCACAGTTTTCAAGACCACTAAAGGAGAGAATCATCCAGCCGTTGCTTCGGTTTTCGTTCGTTTGGCTGATTTGTACAACAAGACTGGAAAAATAAGGGAATCAAAATCATATATCGAAAACGCCCTCCGAATTTACGAAAACCCGATCGGTGGTGTTCATATTGAAGAGATTGCTTTCGGTTTGGCCGATCTATCTGCCATTTACGAATCGATGAACGAGCACGACAAGGCGCTTAAATTGTTAACCAAGACGTTAAGTATGTACGATGATTCACCTGGCCAACAAAACACAATTGCCGGAATTGAAGCTCAAATGGGTGTTATTTACTACATTTTGGGAAACTACTCAGAATCCTACAACTCCTTCGAGCGTGCGACTTCCAAGTTACGATCGAGTGGAGATAAAAAATCGGCCTTTTTTGGGATTGCGATTAACCAAATGGGGCTTGCTTGTGTGCAGTGTCGTGCCATAAATGAAGGAGTGGAGTTGTTTATAGAAGCAAAGAACATATTGGAACAAGAGTATGGACCTTATCACCCTGATACTCTTGGAATCTACTGCAATCTGGCTGCAGCTTATGATGCGATCGGGAGGTTGGATGACGCAATAGAAACATTGGAGTATGTGGTGAGGACGAGAGAAGAAAAAGTAGGGACGGCCGATCCGGACGTGGACGACGAGAAAAAGAGGTTGAACGAGTTGCTGAAAGAAGCTGGCAAAGTTCGAAGCAGGAGAGGTCGATCCCTCGAGATACTTCTCGACACCAACTCTCGTGATGTAAACAACGACAATGGGTTTAAGATTTGA 2118 42.63 ENIEMSGVSNDAINEAVEAQNFTSFKEVSVENNSQKGILNPQSPACPTVHAPNDGLIDTSIDKLYENLCDLQSSEQSTSRHSFGSDGEESLIDSELHHLVGGDVREVEMIREEAEETKTPDGNTLFIEKSSSLDKMSAKMDKNQSVSAKSVSSSPLRNEKNLKKQNHVKKQKNSLSGGLRSKNGIEDSVISGLDNPDLGPYLLKQARNLVSSGENLQKALELALRAVKSFESCADKKNSLEFVMCLHATAAIYCSLGRYSEAIPLLEYSIEIPSLEESKERALANFAGQMQLGDTYAMLGQLDNLISCYTKGLEIQKQVLGGNDIGVSMTCRYLSEAHVQALQFVEAEKICQMALDIHKQNGAIGSLEEAADRRLMGLICETKGDHEAALEHLVLASMAMVANGQEMEVASVDCSIGDIYLSLSQYGEAVFAYQKALTVFKTTKGENHPAVASVFVRLADLYNKTGKIRESKSYIENALRIYENPIGGVHIEEIAFGLADLSAIYESMNEHDKALKLLTKTLSMYDDSPGQQNTIAGIEAQMGVIYYILGNYSESYNSFERATSKLRSSGDKKSAFFGIAINQMGLACVQCRAINEGVELFIEAKNILEQEYGPYHPDTLGIYCNLAAAYDAIGRLDDAIETLEYVVRTREEKVGTADPDVDDEKKRLNELLKEAGKVRSRRGRSLEILLDTNSRDVNNDNGFKI 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8152564 8154939 + Bda023857.1 Bda06g00593 8175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00593 705 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 7 693 - -
Bda06g00593 705 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 7 693 - -
Bda06g00593 705 Coils Coil 661 681 - -
Bda06g00593 705 Pfam Tetratricopeptide repeat 245 267 IPR019734 GO:0005515
Bda06g00593 705 Gene3D Tetratricopeptide repeat domain 398 581 IPR011990 GO:0005515
Bda06g00593 705 Gene3D Tetratricopeptide repeat domain 582 681 IPR011990 GO:0005515
Bda06g00593 705 SUPERFAMILY TPR-like 414 648 IPR011990 GO:0005515
Bda06g00593 705 MobiDBLite consensus disorder prediction 134 159 - -
Bda06g00593 705 ProSiteProfiles TPR repeat profile. 410 443 IPR019734 GO:0005515
Bda06g00593 705 SUPERFAMILY TPR-like 213 537 IPR011990 GO:0005515
Bda06g00593 705 MobiDBLite consensus disorder prediction 134 180 - -
Bda06g00593 705 Gene3D Tetratricopeptide repeat domain 288 397 IPR011990 GO:0005515
Bda06g00593 705 Gene3D Tetratricopeptide repeat domain 182 287 IPR011990 GO:0005515
Bda06g00593 705 SMART tpr_5 536 569 IPR019734 GO:0005515
Bda06g00593 705 SMART tpr_5 410 443 IPR019734 GO:0005515
Bda06g00593 705 SMART tpr_5 452 485 IPR019734 GO:0005515
Bda06g00593 705 SMART tpr_5 243 276 IPR019734 GO:0005515
Bda06g00593 705 SMART tpr_5 328 361 IPR019734 GO:0005515
Bda06g00593 705 SMART tpr_5 495 528 IPR019734 GO:0005515
Bda06g00593 705 SMART tpr_5 620 653 IPR019734 GO:0005515
Bda06g00593 705 SMART tpr_5 286 319 IPR019734 GO:0005515
Bda06g00593 705 Pfam Tetratricopeptide repeat 580 649 - -
Bda06g00593 705 Pfam Tetratricopeptide repeat 409 484 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00593 - - - vvi:100255253 900.197
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00593 Bda11g01660 CCT
Bda06g00593 Bda11g01660 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00593 Bda-Chr6:8152564 Bda11g01634 Bda-Chr11:50128313 0 dispersed
Bda06g00593 Bda-Chr6:8152564 Bda06g00163 Bda-Chr6:2347561 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g740 . . Bda06g00593 . . . Bma06g00233 . . . Cma10g00126 Cma11g00097 Car10g00117 Car11g00097 . . Cpe04g01552 Bhi02g00439 Tan09g2242 . . Hepe09g0198 . . Cla06g01660 Cam06g1845 Cec06g1896 Cco06g1901 Clacu06g1804 Cmu06g1745 Cre06g2564 Cone2ag0905 Cone16ag0107 . . . . . . . Blo15g00269 Bda11g01660 . Bpe07g00835 . . . . Cmo10g00132 Cmo11g00097 . . . . . Cpe18g00843 . . . . . . . . . . . . . . Lsi06g01550 Csa01g00154 Chy02g02576 Cme02g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003461 3 3 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00593 Bda_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0