Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00597 ATGAAGCTAATTGCTTTTACCAGATGCCGTCATGCCCATTCGATCATTCCTAGATTGACTTCTTCATTGCAAATCCGCTCCTTCCAGCCTGATTTTACTCCTAGAGATTTAAACGCCAAGCCAAAAAGGTACAAATATCCGCCATTTTATGATCCATATGGCCCTAGACCACCACCTTCTGACAAAATCGTTCAGCTCGCAGAGCGAATTGCAACTCTACTTCCAGAAGAGCGGCGCCAAATTGGTCCTGCTTTGAGAGAGAGGCTTAGCCTTCCCAAATTGCAGGCAATTTCGACAGAGGGAATGGACTTGGGTTCCCAAGGGAAGGCAGCTTCTGGTGCTTCTCCGGTTGAGGAGAAGAAGGAGAAAACAGCATTTGATGTTAAATTGGAGAAATTTGACGCGGCAGCAAAAATTAAGGTGATCAAAGAGGTGAGAGCCTTTACCAATCTCGGGTTGAAAGAGGCTAAAGATTTGGTCGAGAAGGCTCCTGCTTTGCTTAAACAGGGGGTCACCAAAGAGGAAGCAAATGATATAATAGAGAAGATAAAGGCCGCAGGGGGAGTTGCTGTTATGGAGTGA 582 45.88 MKLIAFTRCRHAHSIIPRLTSSLQIRSFQPDFTPRDLNAKPKRYKYPPFYDPYGPRPPPSDKIVQLAERIATLLPEERRQIGPALRERLSLPKLQAISTEGMDLGSQGKAASGASPVEEKKEKTAFDVKLEKFDAAAKIKVIKEVRAFTNLGLKEAKDLVEKAPALLKQGVTKEEANDIIEKIKAAGGVAVME 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8201172 8201753 + Bda023861.1 Bda06g00597 8179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00597 193 PANTHER RIBOSOMAL PROTEIN L12/ ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS FAMILY PROTEIN 1 193 - -
Bda06g00597 193 SUPERFAMILY ClpS-like 122 192 IPR014719 -
Bda06g00597 193 Gene3D - 119 192 IPR014719 -
Bda06g00597 193 PANTHER 39S RIBOSOMAL PROTEIN L12 1 193 IPR000206 GO:0003735|GO:0005840|GO:0006412
Bda06g00597 193 Pfam Ribosomal protein L7/L12 C-terminal domain 126 189 IPR013823 GO:0003735|GO:0006412
Bda06g00597 193 CDD Ribosomal_L7_L12 62 192 IPR000206 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00597 K02935 RP-L7, MRPL12, rplL; large subunit ribosomal protein L7/L12 - tcc:18603916 281.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00597 Bda-Chr6:8201172 Bda10g00149 Bda-Chr10:4441184 1.48E-40 dispersed
Bda06g00597 Bda-Chr6:8201172 Bda14g01162 Bda-Chr14:10803771 2.33E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g755 . . Bda06g00597 . . . . Bma12g01037 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0140 . . . . . Blo15g00267 . . Bpe07g00838 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004380 1 2 1 1 1 2 1 2 1 1 2 1 1 3 2 1 2 3 1 2 1 1 2 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00597 Bda_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0