Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00600 ATGAGGCCTCAAATCGTGTTATTTGGAGATTCAATAACCGAGCAATCCTTCCGATTGGGTGGATGGGGCGCTGCTCTTGCTGATACATTCTCTCGCAAGGCTGATATTCTGGTTCGTGGCTATGGCGGATATAATACTCGGTGGGCGTTGTTTTTGCTGCACCATCTCTTCCCTTTGGTATCAATCTACTTTTGGGATGGATTGAGACCTCCTGGTGCCGTGACTATTTTCTTCGGGGCTAACGATGCAGCCATATTAGGGAGGACAAGCCAAAAGCAACATGTGCCTCTTGAAGAGTACAAGGAAAACATTAGAAAAATTGTTCAACATTTGAAGAAATGCTCTCCAACTGTTCTAATTGTGCTAATTACACCCCCACCAGTTGACGAAGAAGGACGAAATCAATATGCAAGATCTTTATACGGTGAGCAAGCGAGGGAGCTCCCGGAAAGGATCAATGAAGTAACAGGGCTCTACGCAAAACAATGCATCGAGTTAGCGAAGGAGATGGGCATTCGATCCATCGATCTGTGGTCCAAAATGCAGGAAACGGAAAGTTGGCAGAAGAAATTCCTAAGTGATGGATTGCATTTGACGCCTGAGGGCAATGCAATTGTGCATTATGAAGTTGTGAAAACATTCGAAGAAGCCTGGCTCTCTCCTTCGGAAATGCCTCTCGATTTTCCACATCACTCGGAAATCGATGGAACAATCCCCGAGAAGGCTTTCCAGCAAAAGTGCGTATGA 747 45.65 MRPQIVLFGDSITEQSFRLGGWGAALADTFSRKADILVRGYGGYNTRWALFLLHHLFPLVSIYFWDGLRPPGAVTIFFGANDAAILGRTSQKQHVPLEEYKENIRKIVQHLKKCSPTVLIVLITPPPVDEEGRNQYARSLYGEQARELPERINEVTGLYAKQCIELAKEMGIRSIDLWSKMQETESWQKKFLSDGLHLTPEGNAIVHYEVVKTFEEAWLSPSEMPLDFPHHSEIDGTIPEKAFQQKCV 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8211716 8214268 + Bda023864.1 Bda06g00600 8182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00600 248 CDD Isoamyl_acetate_hydrolase_like 4 213 - -
Bda06g00600 248 Pfam GDSL-like Lipase/Acylhydrolase family 7 205 IPR013830 -
Bda06g00600 248 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE FAMILY PROTEIN, EXPRESSED 1 245 - -
Bda06g00600 248 SUPERFAMILY SGNH hydrolase 3 216 - -
Bda06g00600 248 Gene3D SGNH hydrolase 2 241 IPR036514 -
Bda06g00600 248 PANTHER ISOAMYL ACETATE-HYDROLYZING ESTERASE 1 1 245 IPR045136 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00600 K23978 IAH1; isoamyl acetate esterase [EC:3.1.1.112] - mnt:21387004 414.846
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00931 Bda-Chr5:57881544 Bda06g00600 Bda-Chr6:8211716 1.91E-49 dispersed
Bda06g00600 Bda-Chr6:8211716 Bda15g00253 Bda-Chr15:5134633 1.02E-54 dispersed
Bda06g00599 Bda-Chr6:8208612 Bda06g00600 Bda-Chr6:8211716 2.19E-92 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g759 . . Bda06g00600 . . . . Bma12g01039 . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0143 . . . . . . Blo15g00266 . . Bpe07g00840 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004115 2 2 1 1 1 1 3 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 5 5 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00600 Bda_Chr06 FPKM 4.138786 4.886007 0.629138 0.497792 12.943886 11.753984 13.452179 2.458158 1.964129