Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00601 ATGGAGTTGGAGTTCAAGCCGAGAGAGAGCTTCTCCTCCAACTCCATTTTTCTCTCAGAAAACTTCCCAAAACCATACAAAATGGACGAGTTTCCATTCGAGATCACCCATTCCTCCTCGAAGAACAGCAATTATCTCCAGAACTTTCGCCATCTGGATCAGTTTAATCTCAATGGGTCTTCGTCAAATTCCATTTTTGTCGTCCAAAACCAGAGCTTCGAGTCGTTCAACCCGTACCCATTTTCAAGTTCTGCGCAGAAAGTTGAGGATTTCTATGAGCGTAAGCCTTTTCCAGAGAACAACAATGGCGGAAATGGGCAAGTGATGGACAACATCAACAGTTTAGGTTACTTAAACTTAGCTCAAAAGAGTTGCATTTTGATGAATCCAGAAGAGGAAAAGCACGTGAACTTCATCGTTCCAGATGAAATCTCTTGTATAACATCAGAAAATACTGGGTTTTACAGCAGCAAGGTGGCCATCGATAAAAATGGTGTTTCCCCATTTCTGAGAAGAACTTACAAAGTTAAGAAGAAGTCCAATGTAGTAAAAGGGCAGTGGAGTATCGAAGAAGATAGTTATAATCATGGAATCCACTTGATCCTCGTATCTAAAATAATCCGAGCAACTAATATACTTGTAATGTCCAAAAATAAGGATTCATGGAGTGAGGAAGAAGATAGAATTCTGATCCAAGCTCATTCAGAAATAGGAAACAAATGGGCAGAAATCGCAAAGAAATTGCCAGGAAGAACAGAAAACTCCATTAAAAACCACTGGAACGCAACCAAAAGAAGGCAGAATTCAAAGAGAAAATGTCGATCGAAATACCCAAAAGTTTCTCTTCTCCAAGAATACATAAAGAGCTTAAATTTAGACCTAAACCCCGTTAGATACCAGAGAAAAAGCTCCAACTCCATCGCAAAAACAAGTAACAGCTCCAAAATGAAACCACTGCCTCCACAAACTTCAGAAATGTTCTTCCCAAATGATCGTCTTGATTTCAACGTAGACCCAGAATTTGGTTTCGATGAGAATATGTTTCCATATGGGTGTAGCATTGACTCTCTGATTGATGATATTGGAAACAATTCTGGGGAGGAAATCCAGTACTGTGAGATGAACTCCATTGATGATGATAAGTTTGAGATGGACATACCAGTAGAAATGGGTCATGTGATGGAGTTTGACGTGAAGAAAGAGATGGATCTTGTGGAGATGATCTCCCAAGTTTAG 1236 39.72 MELEFKPRESFSSNSIFLSENFPKPYKMDEFPFEITHSSSKNSNYLQNFRHLDQFNLNGSSSNSIFVVQNQSFESFNPYPFSSSAQKVEDFYERKPFPENNNGGNGQVMDNINSLGYLNLAQKSCILMNPEEEKHVNFIVPDEISCITSENTGFYSSKVAIDKNGVSPFLRRTYKVKKKSNVVKGQWSIEEDSYNHGIHLILVSKIIRATNILVMSKNKDSWSEEEDRILIQAHSEIGNKWAEIAKKLPGRTENSIKNHWNATKRRQNSKRKCRSKYPKVSLLQEYIKSLNLDLNPVRYQRKSSNSIAKTSNSSKMKPLPPQTSEMFFPNDRLDFNVDPEFGFDENMFPYGCSIDSLIDDIGNNSGEEIQYCEMNSIDDDKFEMDIPVEMGHVMEFDVKKEMDLVEMISQV 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8215568 8217094 + Bda023865.1 Bda06g00601 8183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00601 411 MobiDBLite consensus disorder prediction 304 323 - -
Bda06g00601 411 Gene3D - 221 284 - -
Bda06g00601 411 ProSiteProfiles Myb-like domain profile. 214 264 IPR001005 -
Bda06g00601 411 SUPERFAMILY Homeodomain-like 208 272 IPR009057 -
Bda06g00601 411 SMART sant 218 266 IPR001005 -
Bda06g00601 411 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 216 268 IPR017930 -
Bda06g00601 411 CDD SANT 221 264 IPR001005 -
Bda06g00601 411 PANTHER BNAC03G62830D PROTEIN 134 353 - -
Bda06g00601 411 PANTHER MYB PROTEIN-RELATED 134 353 - -
Bda06g00601 411 MobiDBLite consensus disorder prediction 304 320 - -
Bda06g00601 411 Pfam Myb-like DNA-binding domain 219 261 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00601 K09422 MYBP; transcription factor MYB, plant - qsu:112040776 352.058
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00601 Bda-Chr6:8215568 Bda14g00874 Bda-Chr14:6774860 4.20E-111 dispersed
Bda06g00601 Bda-Chr6:8215568 Bda09g01527 Bda-Chr9:46951672 9.97E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g760 . . Bda06g00601 . . . . . . . Cma10g00123 Cma11g00093 Car10g00111 Car11g00085 . . Cpe04g01561 . . . . . . . Cla06g01665 Cam06g1850 Cec06g1902 Cco06g1907 Clacu06g1809 Cmu06g1750 Cre06g2569 . . Cone13ag0144 . . . . . . . . . Bpe07g00841 . . . . Cmo10g00127 Cmo11g00092 . . . . . Cpe18g00846 . . . . . . . . . . . . . . Lsi06g01557 Csa01g00146 Chy02g02583 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008939 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 0 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16024 PF00249 Myb_DNA-binding 1.40E-16 CL0123 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00601 Bda_Chr06 FPKM 12.262369 12.813804 16.715322 16.829329 11.793404 13.654676 13.738161 16.308628 16.139669