Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00609 ATGGATTTGTCGCAGAATAGTTTGACAGGTTCAATTCCACCGGGAGCATTCCAGCTCAAGAAGCTGAACAAGCTCTTGCTCCTCTCTAACAACCTCTCCGGCAAGATACCGCCGGAGATTGGGAATTGTTCGTCGCTAATTAGGTTTCGAGCCAGTAAGAACATGCTCACAGGAGCTATTCCATCACAGATTGGAAATTTGAAGAATCTGAACTTTTTGGATTTAGGAATGAACCGAATCGATGGGATAGTACCACCAGAGATATCTGGCTGCCAGAATCTGACATTTCTTGATCTTCATTCGAACTCCATTGCCGGCTATTTACCAGTAGAACTCAATCAGATTGTGTCACTCCAGTTTGTTGATTTCTCCGATAATTTGATTGAAGGATCACTGAGTACTGGAATTGGCTCGTTAATCTCTCTCACGAAACTCATTCTGGCAAAAAACCGATTCACCGGACAAATTCCAAGTGAAATCGGATCGTGCTTCAAGCTTCAATTGCTGGATCTCAGCGATAATCAGCTATCTGGAAATATTCCGGCGAGCCTGGGAAAGCTTCCGGCTCTTGAAATCGCTCTCAATTTTAGCTGCAACCAACTCATCGGTGAGATTCCAAGTGAGTTTTCAGATTTAGACAAGCTAGGGATTCTAGACCTCTCTCACAACCAGCTATCCGGCGACCTACAAATTCTCGCCGACATGCAAAATCTCGTCGTCCTCAACATCTCGCACAACAATTTCTCGGGGCGGGTCCCGGAGTCTCCATTTTTCAATAAACTACCACTGAGCGTTCTCTCCGGAAACATAGACTTGTGTTTTCCCGGCAACGATTGCCCTGCAGAAAAGCACGGAAGATCCGGCCGCCACACATTAGCGGCGCGTGTGGCGATGGTGGTGCTGCTTTCTACCGCGTGCGCGCTGCTACTAGCCGCGCTCTACATCATCTTCGGAGCAAAAGCGGCGCGACAGAGAAGCTTTGGTAGGTCCCACGATGACGACATCGACACCATGGATAGCGATGTCGAGATGGGCCCAAGCTGGGAAGTGACGCTTTACCAGAGACTCGACCGTCTCAATTTAGTTGCAGATTGTGCCTCAAGAGAGCTCACAGATCAGAGTAGAGCAGAAATGTTTGTTTCTGATTTTATTGACCGATGGCCAAAAGACTCATCCCATAACCATGTTGCTTCTTCCACTAATGGCCTTATAGGCAAGTCTGTATTGTATTTAAAGGATTGGCATTTTGTCAAGGAGTACCCGACATATGATGCATACACAACTCCTCATTTCTTTTGTGATGACTGGCTCAATCTTTATCTCGATAGTTATAGTATGCATATGGATTCAAACACTTTCCTGGAAAATGATGACATAAGTTGCTCGGATTATCGGTTTGTCTACATGGGAGCAAAAGGTACTTGGACTCCCCTTCATGCGGATGTTTTTAGGTCATATAGTTGGTCAGCAAATGTTTGTGGGAAGAAACGATGGGTTCTCTTATCTCCATCTCAGTGTCATCTTGTGTTTGACAGGTATGGAGTTTTCTATGTTGAAGTTGTTCCGGGATTCAATGTCCATTGTTTATGGTTATTTACACAGGCTAGCTGGCTGGAATGCATTCAAGAACAAAATGAAATTATCGAAGCTACAGTATCAATAAACCATAACTGGTTTAATGCTTATAACCTCAGTTGGGTGCTGGATTTGCTTTTACGGGACTACAACGAAGCAAAGGAGTACATAGAGGACATTAGGGATATATGCGATGATTTCGAAGGTCTTTGCCAACGCAATCTTGCGGCTAATACAGCAGGCATGAACTTCTATGATTGCCTTATTCTCTTGGCTCGCTTTGCATTAGCCAATGTGATCCAAGTTTGTTGTCTAGATAGAGATTATGAAAATGGTTGTAGAGGGTCATCCCCAATTGTCCAGCATTTGGCTCTGAACCTTGCATCCATACAGAATATAGCTTTGAAAATGAAATCCTTCATGAGTCTTTCTGGAAATCAAGCAGTCCTTGTCAACTTAACAGAAGAGCTGACAGAGACTAAGTTCCTTAAACTTTGTGAGGGTTTGAGTGAAACTTATGGCACAATACACCATCAGAAGAATTTAAGTTTCCAAGTGAAGAAGGTTCTTACGGATGGTTCAGAGACTTTGAATATCACTCGAATTTGTGGTGACCGAGTTTGTAATCCTGACGATCTTGCCAGTTTCATCGGCAATTTATTAACAAAATTCAGGATTGAATAA 2259 43.69 MDLSQNSLTGSIPPGAFQLKKLNKLLLLSNNLSGKIPPEIGNCSSLIRFRASKNMLTGAIPSQIGNLKNLNFLDLGMNRIDGIVPPEISGCQNLTFLDLHSNSIAGYLPVELNQIVSLQFVDFSDNLIEGSLSTGIGSLISLTKLILAKNRFTGQIPSEIGSCFKLQLLDLSDNQLSGNIPASLGKLPALEIALNFSCNQLIGEIPSEFSDLDKLGILDLSHNQLSGDLQILADMQNLVVLNISHNNFSGRVPESPFFNKLPLSVLSGNIDLCFPGNDCPAEKHGRSGRHTLAARVAMVVLLSTACALLLAALYIIFGAKAARQRSFGRSHDDDIDTMDSDVEMGPSWEVTLYQRLDRLNLVADCASRELTDQSRAEMFVSDFIDRWPKDSSHNHVASSTNGLIGKSVLYLKDWHFVKEYPTYDAYTTPHFFCDDWLNLYLDSYSMHMDSNTFLENDDISCSDYRFVYMGAKGTWTPLHADVFRSYSWSANVCGKKRWVLLSPSQCHLVFDRYGVFYVEVVPGFNVHCLWLFTQASWLECIQEQNEIIEATVSINHNWFNAYNLSWVLDLLLRDYNEAKEYIEDIRDICDDFEGLCQRNLAANTAGMNFYDCLILLARFALANVIQVCCLDRDYENGCRGSSPIVQHLALNLASIQNIALKMKSFMSLSGNQAVLVNLTEELTETKFLKLCEGLSETYGTIHHQKNLSFQVKKVLTDGSETLNITRICGDRVCNPDDLASFIGNLLTKFRIE 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8287012 8306463 - Bda023876.1 Bda06g00609 8191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00609 752 ProSiteProfiles JmjC domain profile. 417 575 IPR003347 -
Bda06g00609 752 PRINTS Leucine-rich repeat signature 212 225 - -
Bda06g00609 752 PRINTS Leucine-rich repeat signature 166 179 - -
Bda06g00609 752 PANTHER OS01G0170300 PROTEIN 1 358 - -
Bda06g00609 752 Gene3D Cupin 338 559 - -
Bda06g00609 752 SMART cupin_9 409 575 IPR003347 -
Bda06g00609 752 Pfam Leucine rich repeat 53 104 IPR001611 GO:0005515
Bda06g00609 752 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 358 - -
Bda06g00609 752 Gene3D Ribonuclease Inhibitor 1 282 IPR032675 -
Bda06g00609 752 SUPERFAMILY Clavaminate synthase-like 362 588 - -
Bda06g00609 752 SUPERFAMILY L domain-like 2 256 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00609 - - - qsu:111991489 471.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00609 Bda-Chr6:8287012 Bda08g00023 Bda-Chr8:199686 7.41E-26 dispersed
Bda06g00609 Bda-Chr6:8287012 Bda09g00445 Bda-Chr9:5862398 4.78E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g790 . . Bda06g00609 . . . . Bma12g01045 . . Cma10g00114 . Car10g00104 . Sed08g0098 . . Bhi02g00483 Tan09g2279 Cmetu02g0880 . Hepe09g0216 . . Cla06g01677 Cam06g1865 Cec06g1914 Cco06g1919 Clacu06g1820 Cmu06g1762 Cre06g2579 . . . Cone19ag0154 . . . . . Blo15g00261 . . Bpe07g00850 . . . . Cmo10g00119 . . . . . . Cpe18g00851 . . . . . . . . . . . . . . Lsi06g01566 Csa01g00132 Chy02g02595 Cme02g01991
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009835 1 4 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00609 Bda_Chr06 FPKM 7.335671 7.603368 4.801648 4.268 2.434733 1.450895 1.610932 1.847098 1.905455