Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00618 ATCGAAATGGATCCGAATCCGAAACGCTTCCCAATCCTCTCCTACGTTATGGCTCGAATCCCTACCATTGGACCTCGGACGGCATCCGCCGCCTCCGATATCAGCTCCGTCCAATTCGACATCGAACAGCCAGCTACGGCGTTATCTCGTCCGGTTGATCATTCAGCCTCGTCTTCCGGCCAAATCGTCAACCATTTGCCTCATCTATCGGACCCGAATCTCCTCGCTTCTATGACTCGCGCCGTGTCGGACGTGGCTCAGACCCGATCTGTGCTTAAAACTCTCGGTGACAGACCGGACCACGAGACCATCGACACCGCCAAAGCTAAGCTCGCTGAGATCGACGCTAATTTGTCTAAACAGCTTGAGGAGATCGTTCTTTCCCCGCGGCCGGTCGAACTGGATCGATTCCAATGGCGAGCGCACCAAGCGGAGAAGGAAATGCAGTGCCGGCAGTTATCGGATAAGGAGAAGCAGATGTATAAAGCGGTTATTCAGTTGGATGAGATGCACGAGGCCTATGAGAAGTTGTTGAAGGAAGCGGAAGAACGGTTGGTAAAGATTTACCAGTCGGCGGAGCGTGGAGTAGAAGAGGAGGACGTGGCTCCCGCAACTGATGAGATTAATGAGGAGGTGGTTGGGATTCTTCACGATGCGAGTGGGAATCAATTGGAACGCATTGATATTTCTGGCCGCAGGTTGCGCATTTTGCCTGAAGCATTCGGGCAAATTCGTGGTCTGACCGTGCTCAACGTTTCCAGTAATCAACTTGAGATTCTTCCTGATGCCATAGCTGGTTTGGAGAACCTTGAGGAGCTAAATGCCTCGTCCAATCTTTTGGAGTCCCTTCCAGATTCAATTGGATTGTTGCAAAAGCTGAAATTATTAAATGTTTCCGGAAACAAGTTAACTTACCTTCCTGATTCTATATGCTACTGCAGGTCACTGGTTGAGTTGGATGTAAGCTTTAATGGCGTGACATATCTGCCAACCAACATTGGTTATGAATTGGGAAAATTGCAGAAGCTTTTTATCCAATTGAACAAGATACGTACTCTTCCTACCTCTGTTTGTGAGATGAAATCTCTGTACCATCTAGATGCCCATTTCAATGAGCTTCGTGGTCTTCCACTTTCGATAGGGAGATTAGTTAATCTGGAGGCTGTCAACTTGAGCAGTAACTTCAGTGATCTGAAAGAACTTCCCGAGACTTTTGGTGATTTAATCAACCTCAAGGAACTTGACCTCAGCAACAATCAGATTCATGCTCTTCCTGATACATTTGGTCGCCTTGACAATTTAACCAAACTTAACTTAGAGCAAAATCCTATTGTAATTCCACCCTTGGAAGTTGTGAAAGAAGGGGTTGAAGCAGTTAAGGTATATATGGCTAAGAGATGGTTTGAACTTCTGGTGGATGAAGAGAAAAAGAGCATGCTTGAAGTGCAAGAAGCAGGACAGACTGGATGGCTGACGCGTAGCTCTTCCTGGCTGAAGAGTTATGCTTCTGGTGTGACGGATTATTTGACATCCCCAAGAGCTCCCAGGGACCCTTATCTCGATCAACAACTATAA 1575 47.11 IEMDPNPKRFPILSYVMARIPTIGPRTASAASDISSVQFDIEQPATALSRPVDHSASSSGQIVNHLPHLSDPNLLASMTRAVSDVAQTRSVLKTLGDRPDHETIDTAKAKLAEIDANLSKQLEEIVLSPRPVELDRFQWRAHQAEKEMQCRQLSDKEKQMYKAVIQLDEMHEAYEKLLKEAEERLVKIYQSAERGVEEEDVAPATDEINEEVVGILHDASGNQLERIDISGRRLRILPEAFGQIRGLTVLNVSSNQLEILPDAIAGLENLEELNASSNLLESLPDSIGLLQKLKLLNVSGNKLTYLPDSICYCRSLVELDVSFNGVTYLPTNIGYELGKLQKLFIQLNKIRTLPTSVCEMKSLYHLDAHFNELRGLPLSIGRLVNLEAVNLSSNFSDLKELPETFGDLINLKELDLSNNQIHALPDTFGRLDNLTKLNLEQNPIVIPPLEVVKEGVEAVKVYMAKRWFELLVDEEKKSMLEVQEAGQTGWLTRSSSWLKSYASGVTDYLTSPRAPRDPYLDQQL 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8452801 8455097 + Bda023889.1 Bda06g00618 8200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00618 524 ProSiteProfiles Leucine-rich repeat profile. 410 431 IPR001611 GO:0005515
Bda06g00618 524 PANTHER LEUCINE-RICH REPEAT-CONTAINING 4 514 - -
Bda06g00618 524 SMART LRR_typ_2 337 360 IPR003591 -
Bda06g00618 524 SMART LRR_typ_2 244 266 IPR003591 -
Bda06g00618 524 SMART LRR_typ_2 267 289 IPR003591 -
Bda06g00618 524 SMART LRR_typ_2 408 431 IPR003591 -
Bda06g00618 524 SMART LRR_typ_2 314 336 IPR003591 -
Bda06g00618 524 SMART LRR_typ_2 383 407 IPR003591 -
Bda06g00618 524 SMART LRR_typ_2 290 313 IPR003591 -
Bda06g00618 524 SUPERFAMILY L domain-like 220 444 - -
Bda06g00618 524 SMART LRR_bac_2 408 427 - -
Bda06g00618 524 SMART LRR_bac_2 360 379 - -
Bda06g00618 524 SMART LRR_bac_2 267 286 - -
Bda06g00618 524 SMART LRR_bac_2 221 240 - -
Bda06g00618 524 SMART LRR_bac_2 337 356 - -
Bda06g00618 524 SMART LRR_bac_2 383 404 - -
Bda06g00618 524 SMART LRR_bac_2 246 263 - -
Bda06g00618 524 SMART LRR_bac_2 290 309 - -
Bda06g00618 524 Pfam Leucine rich repeat 224 280 IPR001611 GO:0005515
Bda06g00618 524 Pfam Leucine rich repeat 385 444 IPR001611 GO:0005515
Bda06g00618 524 Gene3D Ribonuclease Inhibitor 114 333 IPR032675 -
Bda06g00618 524 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 4 514 - -
Bda06g00618 524 Coils Coil 104 124 - -
Bda06g00618 524 ProSiteProfiles Leucine-rich repeat profile. 292 313 IPR001611 GO:0005515
Bda06g00618 524 ProSiteProfiles Leucine-rich repeat profile. 269 290 IPR001611 GO:0005515
Bda06g00618 524 Coils Coil 164 191 - -
Bda06g00618 524 Gene3D Ribonuclease Inhibitor 334 453 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00618 - - - mnt:21385646 710.679
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00618 Bda15g00540 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00618 Bda-Chr6:8452801 Bda07g01633 Bda-Chr7:30354539 1.84E-145 dispersed
Bda02g00268 Bda-Chr2:40998870 Bda06g00618 Bda-Chr6:8452801 4.13E-52 transposed
Bda15g00540 Bda-Chr15:8473381 Bda06g00618 Bda-Chr6:8452801 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g820 . . Bda06g00618 Bda15g00540 . . . Bma12g01054 . . Cma10g00093 Cma11g00070 Car10g00082 Car11g00062 Sed08g0451 . Cpe04g01581 Bhi02g00603 Tan09g2304 Cmetu05g0163 . . . . Cla06g01699 Cam06g1886 Cec06g1935 Cco06g1939 Clacu06g1842 Cmu06g1784 . . . Cone13ag0167 Cone19ag0164 . . . . Blo13g00144 Blo15g00251 . . Bpe07g00858 . . Bma08g00083 . Cmo10g00097 Cmo11g00072 . . . . . Cpe18g00869 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006865 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00618 Bda_Chr06 FPKM 19.8559 22.536577 24.215752 24.243114 34.432617 34.903255 33.852398 31.767145 32.621685