Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00620 ATGGAAATGGATCGCGTGCTTGAGTTTCCGCATACGCATATGGATCGGCGGCCTAGAAAGAGAGCGCGTTTGGGCTGGGACGTTCTTCCCCAGACGGCGAAGGCTCAGGTAGGAATGTTTTGTGGACAAGAGGTTGGAAATGTGACAAGCCTTGCACCTTCAAGAGCACCCTCAGAATATACTAATTCTCTAATATTAAAGGGAGTAGCTCGAAATGACTCCCCCCCATGGAGAGAGGATGACAAAGATGGCCATTACATGTTTGCAATTGGAGAAAATTTAACTCCTCGCTATGTTATTCAGAGCAAGATGGGTGAAGGAACTTTTGGTCAGGTTTTAGAATGCTGGGATAGAGAAAGGAAGGAAATGGTGGGAATCAAAATTGTTCGTGGTGTTAGGAAGTATCGTGAGGCTGCTATGATTGAAATTGAAGTGCTGCAACAGCTTCAGAAGTTTGATAGAGGTGGCAGCCGTTGTGTTCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTGTGTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTACGGAAAAACAATTATCGCTCATTTCCCATTGATCTAGTCCGTGAGATTGGCAGACAACTTTTGGAATGTGTAGCATTCATGCATGATTTACGAATGATTCACACAGATCTAAAGCCAGAGAATATTCTCCTAGTGTCACCCGAATATGTTAAAATTCCAGATTACAAGTATTCATCTCGATCGCCTAAAGATATCACTTTCTATAAAAGAGTTCCAAAGACAAGTGCAATCAAGGTTATTGACTTTGGGAGCACAACATATGAGCGTGTGGATCAAACTTACATTGTTTCAACCCGGCATTATCGTGCACCAGAGGTTATTCTGGGTCTTGGATGGAGTTATCCGTGTGATATATGGAGTGTAGGTTGTATATTGGTGGAATTATGCACGGGGGAGGCATTATTTCAAACTCATGAGAATTTGGAGCACCTTGCAATGATGGAGCGGGTACTTGGTCCATTGCCACTGCATATTCTTAAGAGGGCGGATCGACATGCTGATAAATATATAAGAAGAGGTAGACTGAATTGGCCTGAAGGCGCAACCTCAAGAGATAGTATTAAAGCTGTGCAGAAGCTACCTCGTCTGCAGAACTTGGTAATGCAGCATGTAGACCATTCTGCTGGCGACCTAATTCATCTCGTGCAGGGCCTGCTTCGATACGATCCTGCCTCCCGGCTTACGGCCAGCGAAGCCCTTAAGCATTCATTCTTTACGAAAGATCAGTTGAGGAGATAA 1299 43.8 MEMDRVLEFPHTHMDRRPRKRARLGWDVLPQTAKAQVGMFCGQEVGNVTSLAPSRAPSEYTNSLILKGVARNDSPPWREDDKDGHYMFAIGENLTPRYVIQSKMGEGTFGQVLECWDRERKEMVGIKIVRGVRKYREAAMIEIEVLQQLQKFDRGGSRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECVAFMHDLRMIHTDLKPENILLVSPEYVKIPDYKYSSRSPKDITFYKRVPKTSAIKVIDFGSTTYERVDQTYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPLHILKRADRHADKYIRRGRLNWPEGATSRDSIKAVQKLPRLQNLVMQHVDHSAGDLIHLVQGLLRYDPASRLTASEALKHSFFTKDQLRR 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8483640 8486852 - Bda023891.1 Bda06g00620 8202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00620 432 Pfam Protein kinase domain 98 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda06g00620 432 SMART serkin_6 98 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda06g00620 432 CDD PKc_CLK 85 425 - -
Bda06g00620 432 ProSiteProfiles Protein kinase domain profile. 98 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda06g00620 432 SUPERFAMILY Protein kinase-like (PK-like) 85 427 IPR011009 -
Bda06g00620 432 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 432 - -
Bda06g00620 432 PANTHER SERINE/THREONINE-PROTEIN KINASE AFC2 1 432 - -
Bda06g00620 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Bda06g00620 432 Gene3D Transferase(Phosphotransferase) domain 1 152 425 - -
Bda06g00620 432 Gene3D Phosphorylase Kinase; domain 1 85 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00620 K08287 E2.7.12.1; dual-specificity kinase [EC:2.7.12.1] - vvi:100263937 780.015
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00620 Bda15g00536 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00620 Bda-Chr6:8483640 Bda10g00297 Bda-Chr10:31508701 3.51E-38 dispersed
Bda01g00951 Bda-Chr1:43048468 Bda06g00620 Bda-Chr6:8483640 2.13E-115 transposed
Bda03g01747 Bda-Chr3:56836301 Bda06g00620 Bda-Chr6:8483640 0 transposed
Bda05g00981 Bda-Chr5:58265705 Bda06g00620 Bda-Chr6:8483640 3.55E-21 transposed
Bda06g00860 Bda-Chr6:11851322 Bda06g00620 Bda-Chr6:8483640 1.99E-42 transposed
Bda14g00174 Bda-Chr14:1211944 Bda06g00620 Bda-Chr6:8483640 2.18E-42 transposed
Bda15g00536 Bda-Chr15:8417589 Bda06g00620 Bda-Chr6:8483640 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g850 . . Bda06g00620 Bda15g00536 Bpe12g00674 . . . . . . . . . . Cpe20g00341 . . . . . . . . . . . . . . . Cone2ag0939 Cone16ag0064 . . . Csa01g00904 . . . . . . . . . Bma08g00077 . . . . . Car13g00615 Car18g00195 Cpe09g00994 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001120 4 4 1 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 2 2 2 2 2 2 2 2 2 7 6 3 78
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69675 PF00069 Pkinase 3.50E-48 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00620 Bda_Chr06 FPKM 16.647446 18.364555 21.590441 25.240404 17.622007 16.093636 18.575031 12.581206 11.3482