Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00622 ATGGATGCACTGGGGCTTTCCTACTCTAATTCCTTCTCAATTTCTTGTTCTAACTTTTCCCAAGAAAATTTCACCAAACTGTATAAGAGATCTCATTGTTTAACGTTTTCTGAGCTGCATTTTCTGAAACTCAGGCATCCCCGACGAACTTCTAGACTGGTTTGTTGTATTCAGATGCAATCTGACGAAGAAGAATACGAGTTGAAGCAAGTGAAGGATATGGCTGCTGCCAAAAAAAGATGGGACTCTATGATTAGAGACGGAAAAGTCCAAGTTCTTTTGCCGAGAGAAGCAGGGTATGCCATTCAGCTCTCTAACACAACTTTGCTCGATGTTCGTCCTTCAACTGAGCGCACAAAGGCGTGGGTTAAAAGTTCGACCTGGGTGCCCATATTTGATGTCGATAATACGTTTGATGCAGGAGCTATATCTAGAAAAGTCACAAGCTTCATGATGGGAGGTTGGTGGAGTGGTGTGCCCACCTTGTCCTACAATAGTAAGTTCTTACCAGAAGTTGAGGCCAAGTTTCCGAAAGATACCGACCTGATTGTTTCTTGCCAAAAAGGATTACATTTATATTATAATCCGACAAAGCTTTTATGCAGATCTCTAGCTGCCTGTGAGCTTCTATATAATGCTGGCTACAGAAACCTTTTATGGATTCAAGGGGGATTTGAAGCCGCTGAAGAAGAGGATCTGATCAGAGAAGGTCCAGAGCCGCTTAAATTTGCTGGGATTGGTGGGCTCTCAGAGTTCCTTGGTTGGACTGATCAACAACGAGCTGCAGCTGCAAGGGAAGGTTGGGGATATCGATTAGTGTTCTCTGCCAGACTGATTGGTGTCTTTCTCGTCGCTGACGCGATGTTTCTCGGTGCTCGGCAATTGGGTCAATATATACAGGACTTACGCCCTCACTAA 918 44.23 MDALGLSYSNSFSISCSNFSQENFTKLYKRSHCLTFSELHFLKLRHPRRTSRLVCCIQMQSDEEEYELKQVKDMAAAKKRWDSMIRDGKVQVLLPREAGYAIQLSNTTLLDVRPSTERTKAWVKSSTWVPIFDVDNTFDAGAISRKVTSFMMGGWWSGVPTLSYNSKFLPEVEAKFPKDTDLIVSCQKGLHLYYNPTKLLCRSLAACELLYNAGYRNLLWIQGGFEAAEEEDLIREGPEPLKFAGIGGLSEFLGWTDQQRAAAAREGWGYRLVFSARLIGVFLVADAMFLGARQLGQYIQDLRPH 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8524701 8527386 + Bda023893.1 Bda06g00622 8204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00622 305 CDD RHOD 102 227 - -
Bda06g00622 305 Gene3D - 90 268 IPR036873 -
Bda06g00622 305 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 104 227 IPR036873 -
Bda06g00622 305 SMART rhod_4 93 234 IPR001763 -
Bda06g00622 305 ProSiteProfiles Rhodanese domain profile. 103 237 IPR001763 -
Bda06g00622 305 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 11, CHLOROPLASTIC 1 303 IPR044664 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00622 - - - csv:101221836 414.075
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01402 Bda-Chr3:50769985 Bda06g00622 Bda-Chr6:8524701 3.28E-24 dispersed
Bda06g00622 Bda-Chr6:8524701 Bda06g00795 Bda-Chr6:11009567 1.02E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g860 . . Bda06g00622 . . . . Bma12g01059 . . Cma10g00088 . Car10g00078 . . . . Bhi02g00594 . . . . . . Cla06g01706 Cam06g1894 Cec06g1943 Cco06g1947 Clacu06g1850 Cmu06g1791 Cre06g2606 . Cone16ag0063 . . . . . . . . . . . . . . . Cmo10g00089 . . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01599 Csa01g00099 Chy02g02624 Cme02g02022
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda14g00502 . 71 377 Sulfurtransferasese/Rhodanese AT1G79230 78.5 4.1e-147 517.7
Bda14g00502 . 59 323 Sulfurtransferasese/Rhodanese AT1G16460 73.6 6.4e-114 407.1
Bda14g00903 . 38 274 Sulfurtransferasese/Rhodanese AT5G23060 50.2 6.2e-60 228.0
Bda11g00218 . 1 426 Sulfurtransferasese/Rhodanese AT4G01050 51.8 1.9e-119 426.4
Bda01g01650 . 1 214 Sulfurtransferasese/Rhodanese AT1G09280 57.4 8.6e-63 238.4
Bda01g01648 . 1 214 Sulfurtransferasese/Rhodanese AT1G09280 56.5 9.5e-62 235.0
Bda15g00120 . 91 459 Sulfurtransferasese/Rhodanese AT2G40760 72.7 1.1e-153 540.0
Bda03g01402 . 40 221 Sulfurtransferasese/Rhodanese AT3G08920 61.5 1.3e-64 243.0
Bda06g00622 . 1 305 Sulfurtransferasese/Rhodanese AT4G24750 59.3 3.4e-100 361.7
Bda09g01328 . 17 296 Sulfurtransferasese/Rhodanese AT5G19370 57.4 5.9e-84 307.8
Bda12g00925 . 117 480 Sulfurtransferasese/Rhodanese AT5G55130 70.3 1.7e-149 525.8
Bda06g00795 . 1 163 Sulfurtransferasese/Rhodanese AT4G27700 81.0 1.4e-74 276.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011200 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00622 Bda_Chr06 FPKM 2.645479 2.415998 3.469561 3.645378 3.639979 3.737843 4.097562 5.153313 4.360989