Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00624 AGCATGTCTTCTGCTGCCAAATCCATGCTCAAGTCCTTGACAATGGCGGACTCTTCTGGAATTTCTTTCACTTGCATTTGCCCCACCAAAAATGTCTTCCCTTTTCTTCTCAGTTTCCCCTCTAAAATCTCCAGTTTCCACCTTTCGTGTACTCACTCTTCCGTATTTCCTCCTCCTCTATCTCTCAAAAACAGGTCCTTCAGTTCTCCTTTCGTTACCCTCGTAGCGCGGACCTCAGACTGGGCTCAGGAAGAAGACGACGCCATCACGCCAAACGCAGACGAAGAACTCAAATGGGAAAATGAAGAGCTCGACGATCCAGAATCTAGGATTTCCGAGTGGGAAGTGGAAGGGGAGAGTGGCGAAGGTGGAGAGACAGAGGTAGAAGAAGAGTCATATTCTGAACCACCAGAAGATGCTAAAATTTTTGTCGGGAACTTGCCATATGATGTTGACAGCGAGAAGTTAGCCATGATTTTTGAGAAAGCAGGGATTGTAGAGATTGCAGAGGTTATTTACAATAGAGAAACTGATAGGAGTCGTGGGTTTGGTTTTGTGACTATGAGTACTGTTGAAGAAGCTGATAAAGCTGTGGATATGTTCAATCGATTTGACGTGGGAGGAAGGCTATTGACTGTCAACAAGGCAGCTCCACGAGGAGAGAGGATCGAACGACCTCCTCGCACATTCGACCGCTCTTTTAGAATATATGTTGGTAATTTGCCATGGGACGTGGATGGAGCTCGCCTGCAGCAACTTTTCAGTGAACATGGTAATGTGGTGGATGCGCGAGTTGTCTTCGATCGGGAAACTGGACGTTCCCGTGGGTTTGGATTCGTCGTAATGTCCGACGAATCCGGAATGAACGATGCCATTGAGGCTCTTGATGGACAGAGTCTGGGAGGCAGATCTATACGAGTAAGTGTTGCAGAGGAAAAACCGAGGCGTTCCTTTTGA 957 47.23 SMSSAAKSMLKSLTMADSSGISFTCICPTKNVFPFLLSFPSKISSFHLSCTHSSVFPPPLSLKNRSFSSPFVTLVARTSDWAQEEDDAITPNADEELKWENEELDDPESRISEWEVEGESGEGGETEVEEESYSEPPEDAKIFVGNLPYDVDSEKLAMIFEKAGIVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVDMFNRFDVGGRLLTVNKAAPRGERIERPPRTFDRSFRIYVGNLPWDVDGARLQQLFSEHGNVVDARVVFDRETGRSRGFGFVVMSDESGMNDAIEALDGQSLGGRSIRVSVAEEKPRRSF 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8531279 8532754 + Bda023895.1 Bda06g00624 8206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00624 318 PANTHER RIBONUCLEOPROTEIN 2 317 - -
Bda06g00624 318 SUPERFAMILY RNA-binding domain, RBD 136 232 IPR035979 GO:0003676
Bda06g00624 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 306 IPR000504 GO:0003723
Bda06g00624 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 211 IPR000504 GO:0003723
Bda06g00624 318 PANTHER OS02G0815200 PROTEIN 2 317 - -
Bda06g00624 318 MobiDBLite consensus disorder prediction 100 136 - -
Bda06g00624 318 SUPERFAMILY RNA-binding domain, RBD 228 316 IPR035979 GO:0003676
Bda06g00624 318 CDD RRM_HP0827_like 141 218 - -
Bda06g00624 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Bda06g00624 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 234 312 IPR000504 GO:0003723
Bda06g00624 318 MobiDBLite consensus disorder prediction 118 134 - -
Bda06g00624 318 Gene3D - 223 317 IPR012677 -
Bda06g00624 318 Gene3D - 76 222 IPR012677 -
Bda06g00624 318 CDD RRM_HP0827_like 235 311 - -
Bda06g00624 318 SMART rrm1_1 141 214 IPR000504 GO:0003723
Bda06g00624 318 SMART rrm1_1 235 308 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00624 - - - jre:109000782 376.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01097 Bda-Chr3:11017819 Bda06g00624 Bda-Chr6:8531279 1.03E-14 dispersed
Bda05g01125 Bda-Chr5:59483911 Bda06g00624 Bda-Chr6:8531279 5.44E-42 dispersed
Bda06g00624 Bda-Chr6:8531279 Bda11g00780 Bda-Chr11:7799303 1.62E-22 dispersed
Bda09g01530 Bda-Chr9:46981775 Bda06g00624 Bda-Chr6:8531279 9.09E-12 dispersed
Bda15g00153 Bda-Chr15:4104017 Bda06g00624 Bda-Chr6:8531279 2.47E-11 dispersed
Bda06g00624 Bda-Chr6:8531279 Bda03g00740 Bda-Chr3:6281911 2.39E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g866 . . Bda06g00624 . Bpe12g00685 . . Bma12g01062 . . Cma10g00083 Cma11g00062 Car10g00075 Car11g00056 Sed08g0071 . Cpe04g01590 Bhi02g00588 Tan09g2319 Cmetu02g0952 . Hepe09g0089 . . Cla06g01709 Cam06g1898 Cec06g1947 Cco06g1951 Clacu06g1854 Cmu06g1795 Cre06g2610 . . Cone13ag0188 . . . . . Blo13g00155 Blo15g00244 . . Bpe07g00865 . . . . Cmo10g00085 Cmo11g00064 . . . . . Cpe18g00878 . . . . . . . . . . . . . . Lsi06g01603 Csa01g00094 Chy02g02627 Cme02g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008467 1 1 2 1 1 1 2 1 1 0 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 0 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00624 Bda_Chr06 FPKM 18.404087 19.304922 17.65225 16.752964 25.10891 26.38331 26.381035 26.311546 26.127001