Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00626 CGGTGGAGATCAACCATCATGCCTCTATCACAGGAGGAGATTGGAGAGGCGGCGATAAAGCACGCTCTCAAGGCTTTGCGTAAGCGCCACTTCCTCGAAGAAGGCGCTCATGCTCCTGCTTTTCTCGCCCTCTCCAGGCCTATTGCTTTGCTGGGCTTGGAATGGAAGGAGAAAGTGGAGAATTTGGAGATGGAAGTGCAACAGTGTAACAAAGCACAATCTCGATTGTCTGAGCAGCTTGTCGTGGAAGTAGCCGAATCCAGAGCTTCTAGAGCTTTAATTACAGAGAAAGACGCAATGATCGAGAAACTTCAGAAAGAGTTGACATTAGCAAGGGAAGAATGTTCCGAGTTAAAGACGGACTTAGAAGAGAAATTTAAAGCCTTGGAATTGATTTTGGCTGAGAACAAGGAAATAAAGGCGGAACTAGAAGCAATGATAGTGAAGGCTAGAAATGCAGAGGCAGAAAATAAGATGTTGGTTGATCGGTGGATGTTGCAAAAGATGCAGGACGCTGAACGTCTTAATGAGGCAAATGCACTTTATGAAGATATGATCGAGCGACTCAAGGCCAGTGGTTTGGAGAAACTTGCTCGACAACAGGTAGATGGTGTAGTTCGTCAAAGTGAAGAGGGTGCTGAGTACTTCGAGTCAGTTATTCCATCCACATGCAAGTACCGAACACATGCCCATGAAGGAGGGTGTGGTTCCATTTTGTTTGAATACAATTCTGGAAAATTGATCAGCGGAGGACAAGACCGTTTAATTAAAGTCTGGGACACAAACACTGGATCCTTGAGTAGTACCCTTTATGGTTGCCTTGGTTCTGTACTTGATCTTGCCATTACCCATGACAATAAATCTCTAATTGCAGCTAGCAGCTCAAACAACCTGTACGCATGGGATATCTCCTCTGGACGGGTTCGTCATACTCTAACTGGCCACACTGATAAAGTCTGTACTGTGGCCGTAAGCAAATTCTCTAATCGTCACGTTGTGAGTGCTGCTTATGATCGAACCATTAAAATTTGGGATTTACAGAAAGGTTACTGCACCAACACAATCATTTTCCACAGCAACTGCAATGCAATATGCTTCAGTGTAGATGGGCTAAGTATCTTCTCTGGCCACGTCGATGGAAACCTCCGGTTATGGGATATTCAGACTGGAAAAATGCTCGGAGAAGTCGCAGCTCATTCACTGGCTGTAACTTCTATCTCTTTGTCTAGAAACGGCAATGTAATACTGACAAGTGGGAGAGATAACTTACACAATTTGTTTGATATGCGATCTCTTGAAGTTTGCGGCACTTTAAGGGCGAGTGGAAACAGAGTTGCTTCTAATTGGAGTAGATCGTGTATGAGTCCGGATGACAACTATGTGGCTGCCGGGTCTGCTGATGGATCTGTTCATATTTGGTCGATATCCAGAGCGGACATAGTAAGTACACTGAAAGAACACGCCTCATCGGTTTTATGTTGTTCATGGAGTGGTCTCGGTAAACCTCTTGCGTCGGCCGATAAAAATGGAGTAATATGTACTTGGACTTGA 1551 44.68 RWRSTIMPLSQEEIGEAAIKHALKALRKRHFLEEGAHAPAFLALSRPIALLGLEWKEKVENLEMEVQQCNKAQSRLSEQLVVEVAESRASRALITEKDAMIEKLQKELTLAREECSELKTDLEEKFKALELILAENKEIKAELEAMIVKARNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIERLKASGLEKLARQQVDGVVRQSEEGAEYFESVIPSTCKYRTHAHEGGCGSILFEYNSGKLISGGQDRLIKVWDTNTGSLSSTLYGCLGSVLDLAITHDNKSLIAASSSNNLYAWDISSGRVRHTLTGHTDKVCTVAVSKFSNRHVVSAAYDRTIKIWDLQKGYCTNTIIFHSNCNAICFSVDGLSIFSGHVDGNLRLWDIQTGKMLGEVAAHSLAVTSISLSRNGNVILTSGRDNLHNLFDMRSLEVCGTLRASGNRVASNWSRSCMSPDDNYVAAGSADGSVHIWSISRADIVSTLKEHASSVLCCSWSGLGKPLASADKNGVICTWT 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8538822 8541086 + Bda023897.1 Bda06g00626 8208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00626 516 PANTHER AUTOPHAGY PROTEIN 16-LIKE 11 516 IPR045160 GO:0000045
Bda06g00626 516 SUPERFAMILY WD40 repeat-like 219 515 IPR036322 GO:0005515
Bda06g00626 516 Pfam WD domain, G-beta repeat 453 474 IPR001680 GO:0005515
Bda06g00626 516 Pfam WD domain, G-beta repeat 308 345 IPR001680 GO:0005515
Bda06g00626 516 Pfam WD domain, G-beta repeat 351 386 IPR001680 GO:0005515
Bda06g00626 516 Pfam WD domain, G-beta repeat 229 260 IPR001680 GO:0005515
Bda06g00626 516 CDD WD40 231 515 - -
Bda06g00626 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 484 516 IPR001680 GO:0005515
Bda06g00626 516 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 228 265 - -
Bda06g00626 516 Coils Coil 59 79 - -
Bda06g00626 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 455 483 IPR001680 GO:0005515
Bda06g00626 516 Coils Coil 172 192 - -
Bda06g00626 516 SMART WD40_4 431 474 IPR001680 GO:0005515
Bda06g00626 516 SMART WD40_4 221 260 IPR001680 GO:0005515
Bda06g00626 516 SMART WD40_4 263 302 IPR001680 GO:0005515
Bda06g00626 516 SMART WD40_4 305 345 IPR001680 GO:0005515
Bda06g00626 516 SMART WD40_4 348 386 IPR001680 GO:0005515
Bda06g00626 516 SMART WD40_4 477 516 IPR001680 GO:0005515
Bda06g00626 516 SMART WD40_4 389 428 IPR001680 GO:0005515
Bda06g00626 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 354 IPR001680 GO:0005515
Bda06g00626 516 PANTHER AUTOPHAGY-RELATED 16, ISOFORM F 11 516 - -
Bda06g00626 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 396 431 IPR001680 GO:0005515
Bda06g00626 516 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Bda06g00626 516 PRINTS G protein beta WD-40 repeat signature 373 387 IPR020472 -
Bda06g00626 516 PRINTS G protein beta WD-40 repeat signature 332 346 IPR020472 -
Bda06g00626 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 311 IPR001680 GO:0005515
Bda06g00626 516 Gene3D - 57 358 IPR015943 GO:0005515
Bda06g00626 516 ProSitePatterns Trp-Asp (WD) repeats signature. 247 261 IPR019775 -
Bda06g00626 516 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 349 - -
Bda06g00626 516 ProSitePatterns Trp-Asp (WD) repeats signature. 332 346 IPR019775 -
Bda06g00626 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 363 395 IPR001680 GO:0005515
Bda06g00626 516 ProSitePatterns Trp-Asp (WD) repeats signature. 373 387 IPR019775 -
Bda06g00626 516 Coils Coil 129 163 - -
Bda06g00626 516 Gene3D - 359 516 IPR015943 GO:0005515
Bda06g00626 516 Pfam Autophagy protein 16 (ATG16) 56 176 IPR013923 -
Bda06g00626 516 Coils Coil 94 121 - -
Bda06g00626 516 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 484 516 - -
Bda06g00626 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 269 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00626 K17890 ATG16L1; autophagy-related protein 16-1 - cit:102610991 842.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00626 Bda-Chr6:8538822 Bda07g01678 Bda-Chr7:31112736 5.84E-07 dispersed
Bda06g00626 Bda-Chr6:8538822 Bda04g00146 Bda-Chr4:3969533 1.81E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g873 . . Bda06g00626 . . . . Bma12g01063 . . . . . . Sed08g0061 . Cpe04g01594 Bhi02g00574 Tan09g2330 Cmetu06g0240 . Hepe09g0081 . . Cla06g01715 Cam06g1904 Cec06g1954 Cco06g1958 Clacu06g1860 Cmu06g1802 Cre06g2617 Cone2ag0942 Cone16ag0059 . . . . . . . Blo15g00241 . . Bpe07g00867 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01609 Csa01g00087 Chy02g02633 Cme02g02032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009836 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00626 Bda_Chr06 FPKM 34.521389 39.299297 29.148022 30.363205 24.378622 30.974472 26.654814 29.188921 35.361984