Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00631 ATGCTCAAATCCACTTTCACTCCATTTTTATCCAATTTTTCTGCAAATCTTAAACCCAGGAAGCGAGCCTCAATCTGCAGTGTCTGCAATGGCTTCTCGAAGACCCCACCAACTGTTCGACAAAATGACTCAGCCAACTCTTCTCCCCCCGCCATTCCACCCTACCTGCTTCCACCTACTTCCGCTTACGTCCACCTCCCCTTCTGCCGGAAACGCTGCCACTACTGCGACTTCCCGATCCTCGCCCTCGGTTCCTCCTCTGCTACCGACGACGACCCCAGAATCCTGAACTACGTCGAGCTTCTGTGTCGAGAAATCAATGCGACGAAGAGAGATGCGATGGCTTATCCTCCTCTTCAAACCGTTTTCTTCGGAGGTGGAACGCCATCTCTTGTGCCATCAAAGCTCATCTCGATGATTCTGGGTACCTTGAGATCGAAGTTCGGGCTGGATGTGGATGCAGAGGTGTCGATGGAAATGGATCCAGGGACTTTCGACGCTACAAAGATGGAAGAAATGCTGAAATTGGATGTGAATCGAGTGTCTTTGGGAGTCCAGGCTTTCCAAGACGAATTGCTGAAGGCTTGCGGGAGAGCTCATGGGGTGAAGGAGGTTTATGAGGCAATTGACATTGTCAATTCCTGTGGAATTGGAAACTGGAGTATGGATCTTATCTCTTCTCTCCCTCATCAAACAGCTGAAATGTGGGAAGAGAGTCTGAAATCCGCCATTGAAGCACGACCAAGCCACATCTCAGTGTACGATCTGCAGGTGGAGGAAGACACAAAATTTGGCGTCCTGTACAATCCGGGGGAGTTTCCGCTACCATCAGAGAGACAATCAGCTGATTTCTACAAAATGGCTTCCAGAACACTTGCAGAAGCTGGCTATTGCCATTATGAAATCAGCAGTTACTGCAAGAGCGGCTTGGAGTGCAAGCATAATCTCACTTACTGGAAGAACAAACCTTTCTACGGATTCGGCCTCGGTGCTGCAAGTTATCTCGGCGGACTGAGATTCTCGAGGCCGAGAAAGTTGAAAGAGTATGCCAACTATGTGCAGAGCTTGGAGAACGGGTTGATGGACTGCCATGGAAACGGTCAAGTCGATGCCAAGGACATGACAATGGATTCTGTAATGCTTTCTCTCAGAACCGCTAGAGGCCTTGAGTTAAGGTCTTTCAGGAGAAGCCTATGGCGGTTCTCTGGCTGCTTCTCTTTGCAGGGTTTACCGTCCTTACGTCGAAAGTGGGCACGTGGTTTGCTTGAACGAGCAGAGAAAAGCCATTGCAGTGGATGA 1299 49.58 MLKSTFTPFLSNFSANLKPRKRASICSVCNGFSKTPPTVRQNDSANSSPPAIPPYLLPPTSAYVHLPFCRKRCHYCDFPILALGSSSATDDDPRILNYVELLCREINATKRDAMAYPPLQTVFFGGGTPSLVPSKLISMILGTLRSKFGLDVDAEVSMEMDPGTFDATKMEEMLKLDVNRVSLGVQAFQDELLKACGRAHGVKEVYEAIDIVNSCGIGNWSMDLISSLPHQTAEMWEESLKSAIEARPSHISVYDLQVEEDTKFGVLYNPGEFPLPSERQSADFYKMASRTLAEAGYCHYEISSYCKSGLECKHNLTYWKNKPFYGFGLGAASYLGGLRFSRPRKLKEYANYVQSLENGLMDCHGNGQVDAKDMTMDSVMLSLRTARGLELRSFRRSLWRFSGCFSLQGLPSLRRKWARGLLERAEKSHCSG 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8700456 8701966 + Bda023905.1 Bda06g00631 8213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00631 432 SMART MiaB 59 287 IPR006638 GO:0003824|GO:0051536
Bda06g00631 432 TIGRFAM hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 61 395 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Bda06g00631 432 Gene3D tm_1862 like domain 67 283 IPR023404 -
Bda06g00631 432 PANTHER COPROPORPHYRINIGEN III OXIDASE 37 397 IPR034505 -
Bda06g00631 432 Pfam Radical SAM superfamily 64 241 IPR007197 GO:0003824|GO:0051536
Bda06g00631 432 SFLD Radical SAM 59 423 IPR007197 GO:0003824|GO:0051536
Bda06g00631 432 SUPERFAMILY Radical SAM enzymes 52 403 - -
Bda06g00631 432 CDD Radical_SAM 69 275 - -
Bda06g00631 432 ProSiteProfiles Radical SAM core domain profile. 54 295 IPR007197 GO:0003824|GO:0051536
Bda06g00631 432 PANTHER RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 1, MITOCHONDRIAL 37 397 - -
Bda06g00631 432 SFLD HemN-like, clustered with heat shock genes 59 423 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00631 - - K07739 qsu:112000037 591.267
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g907 . . Bda06g00631 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0202 Cone19ag0190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011201 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00631 Bda_Chr06 FPKM 5.535383 6.92186 7.212252 8.852219 21.081703 19.340899 20.686136 3.9377 4.111225