Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00660 ATGGTGAGAGGAAAAATCCAGATGAAAAAGATCGAAAATGCCAGTAGTAGACAAGTAACCTTTTCCAAAAGAAGAAATGGACTGTTGAAGAAAGCTTATGAGCTGTCTGTGCTATGCGATGCTGAAGTTGCTGTTATCCTTTTCTCTCAGAGAGGCAGACTCTTTGAATTTTCAAGCTCTGACTTGCAAAAGACGATAGAACGATACCGGAAGTATGCAGGCGATCGGCGGAGCAGGATGGCCAACATGCTCTCCATCGAGCAAAGGAAGCATGAAATTGCAGCCATTGTTAAACAGGTTGAGCAAATTGAAGATTCAAAAAGAAAGCTCATGGGACATGGACTGGAAACTTGTTCCCATAAAGAGCTGAAGAAGATAGAAGAAGAGTTGGAGAGGAGCCTATCTTCCATTAGGAAAAGAAAGGCTCAGTTGTTCATGGAGCAAATCCAGCAACTAAAAGCAAAGGAAATACTTCTTTTAGAAGAAAATGCAAACTTATCTGCGCAGTGTGGTGGGGACGTGATGGAGGCAAGAACAGGAAACAAGGAGGCAGAAACATACTGCAGCCAAAGCAGTCGAAGTTCACATGCAGAAGAGACTCAGCTGTTCATTGGATTTCGTTGCTTATAA 630 42.7 MVRGKIQMKKIENASSRQVTFSKRRNGLLKKAYELSVLCDAEVAVILFSQRGRLFEFSSSDLQKTIERYRKYAGDRRSRMANMLSIEQRKHEIAAIVKQVEQIEDSKRKLMGHGLETCSHKELKKIEEELERSLSSIRKRKAQLFMEQIQQLKAKEILLLEENANLSAQCGGDVMEARTGNKEAETYCSQSSRSSHAEETQLFIGFRCL 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9234513 9237064 - Bda023947.1 Bda06g00660 8242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00660 209 Pfam K-box region 87 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda06g00660 209 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Bda06g00660 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda06g00660 209 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda06g00660 209 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda06g00660 209 PANTHER MADS BOX PROTEIN 1 206 - -
Bda06g00660 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda06g00660 209 PANTHER MADS-BOX PROTEIN SOC1 1 206 - -
Bda06g00660 209 Coils Coil 120 143 - -
Bda06g00660 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bda06g00660 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda06g00660 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda06g00660 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda06g00660 209 Coils Coil 149 169 - -
Bda06g00660 209 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Bda06g00660 209 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda05g00042 Bda06g00660 CCT
Bda05g00042 Bda06g00660 ECH
Bda06g00660 Bda15g00745 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00660 Bda-Chr6:9234513 Bda09g00067 Bda-Chr9:1308912 3.50E-61 dispersed
Bda15g00745 Bda-Chr15:10917908 Bda06g00660 Bda-Chr6:9234513 9.68E-92 wgd
Bda05g00042 Bda-Chr5:2762199 Bda06g00660 Bda-Chr6:9234513 4.32E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16027 PF01486 K-box 8.70E-23 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00660 - - rcu:8258322 224.942