Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00670 ATGTTCTTAGACCCGCCCGACGTCTGTAATTTTTCCCGATTGAACCGCGCTTCTCTCGCTGTTTCTTTTTCTGATATTGTCTGGGAATCGAAGCTCCCTTCCAACTATAAGTATCTTGGGAAGAAATTTGCCGATGAAGATGCTGATTTCTTGCGCAAGAAAGATGTTTTTGCTCGATTATGTCGACCTAATCGATTCGATAGTGGCAATAAAGAAGTTTGGTTGGATAAGAGTTCTGGTAAAATTTTCCTGGCAATTTCATCCAAGGCTCTGAAGATAACTGGAATTGATGATAGAAGATATTGGAACTACATTCCATCTGAGGAGTCCAGGTTTCATTATGTGGCCTATCTCAAACAAATCTGGTGGGTGGAAATCGTAGGAGAATTAGAGTTCGAGTTTCCACCCGGAGTTTACGGCCTATATTTCCGGCTCCATTTTGGAAAACCCTCGAAAAGATTCGGCAGAAGAGTTGCTGAGCTCGATCAAGTTCATGGCTGGGATATAAAACCGGTTAGATTTCAACTCTCAACCTCGAATGGCCAGAAAGCCTTGTCCGAATGCTATTTGAATCATTCCGGCAACTGGGTTGATTACCACGTCGGCGATTTCTCCGTTGACGCCCCATACTTGCCGATGAGAGTCAAGTTTTCGATGATTCAGATCGATTGA 672 43.45 MFLDPPDVCNFSRLNRASLAVSFSDIVWESKLPSNYKYLGKKFADEDADFLRKKDVFARLCRPNRFDSGNKEVWLDKSSGKIFLAISSKALKITGIDDRRYWNYIPSEESRFHYVAYLKQIWWVEIVGELEFEFPPGVYGLYFRLHFGKPSKRFGRRVAELDQVHGWDIKPVRFQLSTSNGQKALSECYLNHSGNWVDYHVGDFSVDAPYLPMRVKFSMIQID 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9308583 9309947 - Bda023957.1 Bda06g00670 8252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00670 223 Pfam Phloem protein 2 84 223 IPR025886 -
Bda06g00670 223 PANTHER F-BOX PROTEIN PP2-A15 1 223 - -
Bda06g00670 223 PANTHER F-BOX PROTEIN PP2-A14 1 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00670 - - - tcc:18605507 335.109
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00670 Bda15g00737 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00648 Bda-Chr6:8964925 Bda06g00670 Bda-Chr6:9308583 7.72E-161 dispersed
Bda06g00670 Bda-Chr6:9308583 Bda15g00434 Bda-Chr15:7350322 3.34E-134 dispersed
Bda06g00668 Bda-Chr6:9300356 Bda06g00670 Bda-Chr6:9308583 2.56E-153 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g604 Blo06g01114 . . . . Bpe07g00950 . . . . . . . . . . . . . . . . . . Cla01g00547 Cam01g0572 Cec01g0562 Cco01g0588 Clacu01g0566 Cmu01g0538 Cre09g1969 . . . . . Csa05g00583 Chy09g00923 . . . Bda06g00670 Bda15g00737 . Bpe12g00417 Bma08g00341 . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g00591 . . Cme09g01452
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001664 6 3 1 3 3 2 3 2 2 2 2 2 2 2 2 3 2 3 3 2 2 2 2 2 2 2 1 3 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00670 Bda_Chr06 FPKM 8.442029 9.275149 11.602341 11.614389 11.315644 7.401669 12.907067 10.28584 13.163404