Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00671 ACCCCATCTCTTCCTCCAGGTCCACGGCCATGGCCGATCATCGGAAACCTCCATCAAATCGGCCGAAACGCTCACATCTCGTTGACCCACTTTTCAAAAACTTATGGCCCTTTAATCTCTCTCAAACTCGGATCTCAGCTTTTGGTCGTTGCTTCTTCTCCGTCTTCTGCAACAGAAATCCTCAAAACTCACGATCGTATGCTCTCTGCAAGATACATTTTCAAGACGTCTTTGCCAGAAACCAGACCCTTATCTCTGATATTTTCAGCTCAGTGTGATGATAGCTGGAAATCCTTGAGATCAATCTGCCGGAGCAATCTTTTTACAGCGAAAACCGTAGAATCACAGGCGGGTTTAAGAAGGAAGAAGATGGGAGAAATGGTGGAGTACTTAAGATCAAAGCAAGGAGAAACGGTGAAAATAAAAGAGATTATTTTTATTACAGTCTTCAATACATTATCCAATCTTATTTTTTCGACGGACTTTCTTGGATTTGAAGGTGAAACTTTTAGTGGGTTTAAAGAGTCGATGCAGAAGATGATGAATCTGGGTTTAGTTCCTAATCTTGCAGACTTTTATCCTGTTTTGGAGGATTTTGATCTTCAGGGTCTGAGAAAGAAGTCGCTTTTGTACATGAAGCAGATTACTTTTTCTTTTACAAAGCTTATGGATGAAAGAAGAAAAGGTTGCAGAAAGAAAGATGATTCAGAGCGTGATTTCTTGGATATTTTGATCGAAAGTAGATTTTCTGATGAGCAGATCAAATTAAAATTTTCGGAGATTCAGGGTAATGTTTTTCAATCTTTGCAGGAGTTATTATCTGCAGGAACAGACACGACGACAACAGCAGTGGAATGGGCAATGGCTGAACTGATAGCAAACAAAGAGATAATGCACAAAGTTCGAGCGGAGATGGAGCGAGAGATGAAAGAGGACGCCATTGTTGACGAAGCAAAGCTTTCCAAGCTTCGTTACTTACAGGCCTGCGTAAAGGAAACCCTAAGGCTACACCCACCAGCTCCATTTCTTCTCCCTCGTCGAGCAAGCGAAGAATGCGAGGTATTGGGCTACAGAATTCCAAAAGAAGCTCGAATATTCATAAATGTCTGGGCGATGGGAAGAGATCCAGAGATCTGGGAAGAAGCATTGGTGTTCGAACCGGAGAGATTTATGGGGTCGGAGATGGAGTCCAAGGGTCAAAACTTCGAGTTTCTGCCGTTTGGAGGAGGAAGAAGACTGTGTCCAGGGATGGGCATGGCTTCAGTTCAAGTTCCATTGTTTTTAGCCACTCTGATTCAGAGCTTTGATTGGGGCCTTCCCGACGGAGAAGACCCCTGTCAAGCTGGCTATTTAAATGGAAACCTTGGGATTACAATGCAGAAAGAGAACCCTCTTCTGCTGATCCCACGAGTTAAACACTTAAACCTAAATAACTAG 1437 43.01 TPSLPPGPRPWPIIGNLHQIGRNAHISLTHFSKTYGPLISLKLGSQLLVVASSPSSATEILKTHDRMLSARYIFKTSLPETRPLSLIFSAQCDDSWKSLRSICRSNLFTAKTVESQAGLRRKKMGEMVEYLRSKQGETVKIKEIIFITVFNTLSNLIFSTDFLGFEGETFSGFKESMQKMMNLGLVPNLADFYPVLEDFDLQGLRKKSLLYMKQITFSFTKLMDERRKGCRKKDDSERDFLDILIESRFSDEQIKLKFSEIQGNVFQSLQELLSAGTDTTTTAVEWAMAELIANKEIMHKVRAEMEREMKEDAIVDEAKLSKLRYLQACVKETLRLHPPAPFLLPRRASEECEVLGYRIPKEARIFINVWAMGRDPEIWEEALVFEPERFMGSEMESKGQNFEFLPFGGGRRLCPGMGMASVQVPLFLATLIQSFDWGLPDGEDPCQAGYLNGNLGITMQKENPLLLIPRVKHLNLNN 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9322506 9323980 + Bda023958.1 Bda06g00671 8253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00671 478 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 407 416 IPR017972 GO:0005506|GO:0016705
Bda06g00671 478 SUPERFAMILY Cytochrome P450 5 466 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda06g00671 478 Pfam Cytochrome P450 5 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda06g00671 478 PRINTS P450 superfamily signature 405 414 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda06g00671 478 PRINTS P450 superfamily signature 328 339 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda06g00671 478 PRINTS P450 superfamily signature 275 292 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda06g00671 478 PRINTS P450 superfamily signature 414 425 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda06g00671 478 PRINTS E-class P450 group I signature 264 281 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda06g00671 478 PRINTS E-class P450 group I signature 327 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda06g00671 478 PRINTS E-class P450 group I signature 284 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda06g00671 478 PRINTS E-class P450 group I signature 404 414 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda06g00671 478 PRINTS E-class P450 group I signature 414 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda06g00671 478 PRINTS E-class P450 group I signature 368 392 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda06g00671 478 PRINTS E-class P450 group I signature 32 51 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda06g00671 478 PRINTS E-class P450 group I signature 148 166 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda06g00671 478 Gene3D Cytochrome P450 1 467 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda06g00671 478 Coils Coil 288 308 - -
Bda06g00671 478 PANTHER (S)-N-METHYLCOCLAURINE 3'-HYDROXYLASE ISOZYME 1-LIKE 3 470 - -
Bda06g00671 478 PANTHER CYTOCHROME P450 71B11-RELATED 3 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00671 - - - csv:116403724 549.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00647 Bda-Chr6:8962335 Bda06g00671 Bda-Chr6:9322506 0 dispersed
Bda06g00650 Bda-Chr6:8985876 Bda06g00671 Bda-Chr6:9322506 0 dispersed
Bda06g00671 Bda-Chr6:9322506 Bda07g01886 Bda-Chr7:36299747 3.69E-163 dispersed
Bda06g00669 Bda-Chr6:9302833 Bda06g00671 Bda-Chr6:9322506 1.37E-65 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g478 . . . . . . . . . . . Cma15g01159 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00383 Chy09g01127 . . . Bda06g00671 . . . . . . . Cmo15g01220 . . . . . Cpe13g00212 Bhi12g00390 . . . . . Lcy12g1769 . . . . . . . . . . Cme09g01658
Vvi16g606 . Blo15g00156 . . Bpe03g00135 Bpe07g00949 Bma10g01211 . . . . . . . . . . . . . . . . . Cla01g00545 . . . . . . . Cone5ag0838 . . . Csa05g00580 Chy09g00925 . Blo07g00422 Blo09g00081 Bda06g00671 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g00589 . . Cme09g01454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000969 6 2 3 2 3 2 1 3 3 2 3 2 1 1 1 2 2 11 1 3 2 3 2 3 3 3 0 2 4 4 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00671 Bda_Chr06 FPKM 0.0 0.0 0.0 0.0 2.042882 1.528607 2.726366 0.0 0.0