Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00672 ATGGGATTTTTCCGGCGACTCTTCTGCCGTAGAAAACCCAAGCTCAATTCCTCGGACTTCCCCTCCGATCAGAAGAATAAGAACAAGAAATGGAGTTTCATTAAGTCTTCGAACTCCGGTCAGACAGGAAGAAGTACGACATCTTCCAACTCCGACGCATTTGAAGATTTTCAGCCATACGCAGAGCCTTCGGACGTGAATAAGCACGCCATCGCCGTCGCGGCAGCGACGGCTGCAGTTGCAGAAGCAGCTCTCGCTGCAGCTCACGCCGCCGCCGAAGTAGTTCGGCTGGCTAGTGAGGGTAATTCTTATGATGCGCGCGTCTCCGTCGGTGGTGGGAAATCTGAAATCGCCGCCGTGAAGATTCAGGCGTTCTTCCGGGGATATTTAGCTAGGAGGGCACTGAGGGCACTGAAAGCATTGGTGAAGCTTCAAGCATTGGTGAGAGGTAACATTGTGAGGAAGCAAACAGCTGATATGCTTAAGCGAATGCAGACACTGGTTCGAGTTCAAGCTCGGGCTCGGGCTAATCGCTCTCGCTCTTCCGAGTCTTTTCATTTTCTCTGCAACTCTTCCATCTCTCATCTCCCTGCTTCATTTCAACAATGGCTGATTCGGAGTTTTTGTTCGCAGAGAAGCGGGTCGAATTCAAGCTTGAGAGAGACGACGATGATGAATGTACACAAATCACAGATGGGTTTGAATTTCTCGCGCCATTTCCCGGAAAAGGACGTTTCTTGCTGGAGTATGCAAGCCGACGATGAGATTCCCGACAAAATACTCGAAGTGGATACGTGGAAACCGCACAAGAACTCCAAAAAACTTGCTAAATCGTTCAATAAAATTCACCAGGGTAGGGCGTCGGAAAACGTCAATCAAACCTTGGCTGCGTTCGATTCTCCGTCCAAGCATCTCTCGACGACTAATTTGACGATTCGAAAAGAGGGGTCGCCGGCGAAAACGTCGGAGGATAGCCCACAAGTCCCGTCGTCGTCAAAGCCAGGAAGCAGTTGCAGAGGAGGATGGTTTACGCCGACAGCGAGTGAGCGTTCGTGGGGGTTGTTCGGCGATTATTCCGGCCATCCAAACTACATGTCCAACACGGAATCTTCGAGAGCCAAGGTGAGGTCGCATAGTGCTCCGAGGCAAAGGCTCGAGTTTGACAAATTTGACTCTTCTCTTCAAAGATCTTGGGATGGTTGGAGCAATAACACAAATGATTGTTTTGGCAATGAATCTAGGTTTGGAAGTGCTAAATTAAGGTAA 1266 49.68 MGFFRRLFCRRKPKLNSSDFPSDQKNKNKKWSFIKSSNSGQTGRSTTSSNSDAFEDFQPYAEPSDVNKHAIAVAAATAAVAEAALAAAHAAAEVVRLASEGNSYDARVSVGGGKSEIAAVKIQAFFRGYLARRALRALKALVKLQALVRGNIVRKQTADMLKRMQTLVRVQARARANRSRSSESFHFLCNSSISHLPASFQQWLIRSFCSQRSGSNSSLRETTMMNVHKSQMGLNFSRHFPEKDVSCWSMQADDEIPDKILEVDTWKPHKNSKKLAKSFNKIHQGRASENVNQTLAAFDSPSKHLSTTNLTIRKEGSPAKTSEDSPQVPSSSKPGSSCRGGWFTPTASERSWGLFGDYSGHPNYMSNTESSRAKVRSHSAPRQRLEFDKFDSSLQRSWDGWSNNTNDCFGNESRFGSAKLR 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9368649 9371387 + Bda023963.1 Bda06g00672 8254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00672 421 MobiDBLite consensus disorder prediction 31 54 - -
Bda06g00672 421 Gene3D - 112 167 - -
Bda06g00672 421 PANTHER CALMODULIN-BINDING PROTEIN 1 407 - -
Bda06g00672 421 Pfam IQ calmodulin-binding motif 118 136 IPR000048 GO:0005515
Bda06g00672 421 Pfam IQ calmodulin-binding motif 139 156 IPR000048 GO:0005515
Bda06g00672 421 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Bda06g00672 421 ProSiteProfiles IQ motif profile. 139 166 IPR000048 GO:0005515
Bda06g00672 421 MobiDBLite consensus disorder prediction 15 54 - -
Bda06g00672 421 SMART iq_5 114 136 IPR000048 GO:0005515
Bda06g00672 421 SMART iq_5 137 158 IPR000048 GO:0005515
Bda06g00672 421 MobiDBLite consensus disorder prediction 400 421 - -
Bda06g00672 421 PANTHER IQ-DOMAIN 5-RELATED 1 407 - -
Bda06g00672 421 MobiDBLite consensus disorder prediction 15 30 - -
Bda06g00672 421 MobiDBLite consensus disorder prediction 298 342 - -
Bda06g00672 421 Pfam Protein of unknown function (DUF4005) 326 385 IPR025064 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00672 - - - rcu:8258281 285.034
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00058 Bda06g00672 CCT
Bda05g00058 Bda06g00672 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00672 Bda-Chr6:9368649 Bda12g01085 Bda-Chr12:42555112 2.29E-32 dispersed
Bda07g01956 Bda-Chr7:36949833 Bda06g00672 Bda-Chr6:9368649 5.12E-18 dispersed
Bda14g00958 Bda-Chr14:7709341 Bda06g00672 Bda-Chr6:9368649 2.30E-18 transposed
Bda05g00058 Bda-Chr5:3419544 Bda06g00672 Bda-Chr6:9368649 2.28E-33 wgd
Bda06g00646 Bda-Chr6:8945237 Bda06g00672 Bda-Chr6:9368649 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g612 . Blo15g00158 Bda05g00058 . Bpe03g00297 . . . Cmo16g00149 . . . . . Sed01g3916 . Cpe14g00120 Bhi01g01353 Tan01g0278 Cmetu09g1857 Lac11g2130 Hepe07g0179 Mch10g0175 . Cla01g00296 Cam01g0307 Cec01g0297 Cco01g0314 Clacu01g0307 Cmu01g0292 Cre09g2216 . . . . Lsi05g01253 Csa05g00319 Chy09g01189 Cme06g00975 . . Bda06g00672 . . . . . . . . Cma16g00142 . . . . . Bhi12g00208 . . Lac11g2130 Hepe06g1578 . Lcy12g1690 Cla05g00859 Cam05g0945 Cec05g0950 Cco05g0950 Clacu05g0932 Cmu05g0890 Cre05g0975 . Csa03g01689 Chy06g00922 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006767 3 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 4 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00672 Bda_Chr06 FPKM 8.323326 8.251557 22.796772 27.015703 6.536303 6.274868 9.920245 9.939967 9.649191