Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00679 ATGAATTGCTCCTCCCCCATTCTCAATCAGAATCTTCAGGGCCCGGCCGGAGTTGCAGAACAAAAGGGAAGCCCAGACCCAGAAAAAAACGATCAAGAAGAGAGAGCTAGATGCGAATGGGATATCAGTTTGGCTACTGTTGTTGCTACTACCTCTGTCACAGCCGGCTCCGACACTCTTGGAGTTACTGAATTTGACCCTACTGGTTCCATTTTGGCCACCGGAGGAATCGCCAGAAAGATTCGGATTTACACTTTGAATTCTCTGTTGCCCCACCGTGAAACTTTCATCGGCGAGAATCCCGGCGTTTCTCTCCTGGATCACGATGAAGCCTGTAGCTTTTACATTTGTACGCCGGCGAAGCTGAGCAGTCTCCGTTGGCGCCCCGGAGAAGACGGCCGGGTCTTGGGGTCCGGCGACTACGACGGGGTGGTCGCCGAGTACGATCTTGACCGGCAAACACCTGTTTTCGAGCGGGACGAGCACGGCGGGCGGCGGGTTTGGAGCCTTGATTATTCGATTATCGATCCGATTCTGGGGGCATCCGGGTCGGACGATGGAACAGTGCAGATGTGGGACCCGCGGTGTGAGAGTGGGGAATGTGTGGCTAAGGTGCAGCCCAGCGTAGCAGGCAGTCCAGTTTGTTGTGTAGAGTTCAATCCCTTCTGTGGATCGATCCTAGCCATCGGATGCGCTGACCGAAAAGCATACGCCTACGATATCCGAAAAATGGCTGACCCAATAAAGATTTTCGACGGGCATAGAAGAACCGTGACATATATTAGATTTCTCGACCATGGTACAATGATATCAGCCAGCACAGACGGATGCCTAAAATTATGGGACGTAGAAAACTCCAATGCAATTCGCACGTACGAAGGGCACGTGAACATTCGGAGTTTCGTCGGGTTATCGGTGTGGAGAAACGGAGGGCTAATCGGGTGTGGTTCGGAAAACAATCAAGTATTTGTATACAACAAGCGGTGGGGGGAGAGAATTTGGGTGCATGAGTTCGAGCCGACCGATGCTTCGAGATTGAGCCATGGGTTCGTGAGTAGTGTGTGTTGGAGGCAAGTGGGTGTAGACGAGTGCACTCTAGTGGCCGGCGGGTCGAATGGGGTTTTGCAAGTTTTTGTTGGCAAAAGGAAGCCAATTTAA 1158 52.16 MNCSSPILNQNLQGPAGVAEQKGSPDPEKNDQEERARCEWDISLATVVATTSVTAGSDTLGVTEFDPTGSILATGGIARKIRIYTLNSLLPHRETFIGENPGVSLLDHDEACSFYICTPAKLSSLRWRPGEDGRVLGSGDYDGVVAEYDLDRQTPVFERDEHGGRRVWSLDYSIIDPILGASGSDDGTVQMWDPRCESGECVAKVQPSVAGSPVCCVEFNPFCGSILAIGCADRKAYAYDIRKMADPIKIFDGHRRTVTYIRFLDHGTMISASTDGCLKLWDVENSNAIRTYEGHVNIRSFVGLSVWRNGGLIGCGSENNQVFVYNKRWGERIWVHEFEPTDASRLSHGFVSSVCWRQVGVDECTLVAGGSNGVLQVFVGKRKPI 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9417061 9418218 + Bda023973.1 Bda06g00679 8261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00679 385 MobiDBLite consensus disorder prediction 1 35 - -
Bda06g00679 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 251 291 IPR001680 GO:0005515
Bda06g00679 385 PANTHER WD REPEAT-CONTAINING PROTEIN RUP1 21 383 IPR044616 -
Bda06g00679 385 SMART WD40_4 285 326 IPR001680 GO:0005515
Bda06g00679 385 SMART WD40_4 46 85 IPR001680 GO:0005515
Bda06g00679 385 SMART WD40_4 198 240 IPR001680 GO:0005515
Bda06g00679 385 SMART WD40_4 152 193 IPR001680 GO:0005515
Bda06g00679 385 SMART WD40_4 108 149 IPR001680 GO:0005515
Bda06g00679 385 SMART WD40_4 244 282 IPR001680 GO:0005515
Bda06g00679 385 SMART WD40_4 337 379 IPR001680 GO:0005515
Bda06g00679 385 MobiDBLite consensus disorder prediction 1 17 - -
Bda06g00679 385 ProSitePatterns Trp-Asp (WD) repeats signature. 269 283 IPR019775 -
Bda06g00679 385 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 251 285 - -
Bda06g00679 385 SUPERFAMILY WD40 repeat-like 63 377 IPR036322 GO:0005515
Bda06g00679 385 Pfam WD domain, G-beta repeat 246 282 IPR001680 GO:0005515
Bda06g00679 385 Pfam WD domain, G-beta repeat 161 193 IPR001680 GO:0005515
Bda06g00679 385 Gene3D - 37 379 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00679 K10143 RFWD2, COP1; E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27] - jre:108998670 544.658
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00679 Bda15g00733 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00679 Bda-Chr6:9417061 Bda07g00842 Bda-Chr7:9865254 8.70E-55 dispersed
Bda15g00733 Bda-Chr15:10813574 Bda06g00679 Bda-Chr6:9417061 0 wgd
Bda06g00639 Bda-Chr6:8900321 Bda06g00679 Bda-Chr6:9417061 4.21E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g656 . Blo15g00164 . . . Bpe07g00941 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda06g00679 Bda15g00733 . Bpe12g00423 Bma08g00337 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008150 3 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00679 Bda_Chr06 FPKM 78.825966 86.18103 73.260704 71.946754 123.808304 129.436127 126.082291 96.194717 105.118744