Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00682 ATGGTGGAGGTGAGGGTGCCGAACCTGGACTGTGAGGGATGTGCTTCTAAGCTGAGGAAAGCTCTGTTAAAACTTAAGGCAGGAGTGGAAGAAGTAGAAGTGGAAATGGAGATGCAGAAGATAACAGTGAGAGGGTACAAAATAGAGGAAAAGAAAGTGGTGAAAGCCATAAAAAGAGCTGGAAAAGCAGCAGAGCCATGGCCATTTCCAGGGTTTTCCAATCACTTCACGTCTTTCTACAAATACCCTTCTCACATCGTCAGCCATTACTACTACCAAGCTTTCAGCAATGGCAGCTCCAATGGAGTCCACACTTTTTTCCATACTCCTTCTGCTTACTCCCTCGCCGTCTCCTCTGATGAATCTGTTTCTTCTCTTTTTAGTGACGATAATCCCCATGCCTGCTCCATCATGTGA 417 45.8 MVEVRVPNLDCEGCASKLRKALLKLKAGVEEVEVEMEMQKITVRGYKIEEKKVVKAIKRAGKAAEPWPFPGFSNHFTSFYKYPSHIVSHYYYQAFSNGSSNGVHTFFHTPSAYSLAVSSDESVSSLFSDDNPHACSIM 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9442432 9443710 - Bda023977.1 Bda06g00682 8264

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00682 138 SUPERFAMILY HMA, heavy metal-associated domain 2 68 IPR036163 GO:0046872
Bda06g00682 138 Coils Coil 15 35 - -
Bda06g00682 138 Pfam Heavy-metal-associated domain 4 62 IPR006121 GO:0046872
Bda06g00682 138 ProSitePatterns Heavy-metal-associated domain. 6 34 IPR017969 GO:0046872
Bda06g00682 138 ProSiteProfiles Heavy-metal-associated domain profile. 1 66 IPR006121 GO:0046872
Bda06g00682 138 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 1 138 IPR045181 GO:0046872
Bda06g00682 138 Gene3D - 1 65 - -
Bda06g00682 138 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 31 1 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00682 - - - pop:7474045 194.126
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00682 Bda15g00728 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00682 Bda-Chr6:9442432 Bda02g00028 Bda-Chr2:1364312 6.85E-28 dispersed
Bda15g00728 Bda-Chr15:10705365 Bda06g00682 Bda-Chr6:9442432 1.34E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g668 Blo06g01124 . . . . Bpe07g00939 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0090 . . . . . . Bda06g00682 Bda15g00728 . Bpe12g00434 . Bma12g01122 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008162 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00682 Bda_Chr06 FPKM 50.155491 47.784176 21.42384 23.120882 1.197395 1.655191 1.043786 6.965088 7.649213