Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00683 ATGGAGAGCTCTACATTGTCTGGCTTGTTGAAAATGGTGGCTGAAGAGTTCCCAACTCGCCGGGCTCTTTCAGTCACCGGAAAATTCGAATTAACGCATTCTCGGCTTCAAGAACTCGTAGAATCGGCCGCTTCAAAACTGATAGCCGGTAATGTCAAGCCAGGCGATGTTGTCGCCCTCGTTTTTCCGAATACCGTCGAGTTTGTGATTTCGTTTTTGGCTGTGATCCGAGCACGAGCGACGGCGGCGCCATTGAATGCTGCGTACACTGCCGAAGAGTTCGAGTTCTACTTATCGGACTCCGGTTCCAAGCTTCTACTAACCTCTATAGAAGGAAATACTTCGGCTGAAACCGCCGTTTTGAAGCTCCAAATTCCATGCGCCACCGTACATCTTTCTCATTCAGACGCCGATGTAAACATTTCCCTGCCGGGATCAGACCCGTTCGCCTCCTTAGCTGACTTCGTAAACCTGCCTTCCGACGTTGCGCTGTTTCTTCACACTTCCGGCACCACTAGCCGTCCTAAAGGAGTTCCGTTAACTCAGCTCAATTTGGCTTCGACGGTGAAAAATATAAAATCGGTTTACAAAATCGTGCATTCCGACTCGACTGTGATTGTTCTTCCGTTATTTCACGTACACGGTTTATTAGCCGGATTGCTGAGCTCACTAGGCGCTGGAGCTGCCGTTGCTCTCCCGGCAGCCGGCCGATTCTCCATATCATCTTTTTGGTCGGACATGCACCGGTACGAAGCCACATGGTACACTGCCGTCCCGACGATTCACCAAATCATATTGGACCACCATTCGACTCATCCGGAACCCCTTTACCCAAAGCTTCGATTCATTCGAAGCTGCAGTGCTTCTCTTGCTCCGGCCATTATGACCCGACTTGAGGAAGCATTCGGGGCTCCAGTGTTAGAGGCCTACGCGATGACGGAAGCGACCCATCTCATGACGTCGAATCCCATAAACTGTGCGATAATTCCAAGAGAAGGATCAGAAATTAATGAAGAAGAGGTGCTAAGGTTTTGCAAGAAGAACCTGGCCGGCTTTAAAGTACCAAAAAGGGTATTCATCACAGACTCTCTTCCAAAGACAGCCAGTGGCAAAATCCAGAGGAGGATTGTGGCTGAGCACTTCCTTTCCCAGATTTCTACTGCAAGTGTCTCCAAATCTGGGGCCTAA 1188 49.75 MESSTLSGLLKMVAEEFPTRRALSVTGKFELTHSRLQELVESAASKLIAGNVKPGDVVALVFPNTVEFVISFLAVIRARATAAPLNAAYTAEEFEFYLSDSGSKLLLTSIEGNTSAETAVLKLQIPCATVHLSHSDADVNISLPGSDPFASLADFVNLPSDVALFLHTSGTTSRPKGVPLTQLNLASTVKNIKSVYKIVHSDSTVIVLPLFHVHGLLAGLLSSLGAGAAVALPAAGRFSISSFWSDMHRYEATWYTAVPTIHQIILDHHSTHPEPLYPKLRFIRSCSASLAPAIMTRLEEAFGAPVLEAYAMTEATHLMTSNPINCAIIPREGSEINEEEVLRFCKKNLAGFKVPKRVFITDSLPKTASGKIQRRIVAEHFLSQISTASVSKSGA 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9447641 9449948 - Bda023978.1 Bda06g00683 8265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00683 395 Pfam AMP-binding enzyme 13 322 IPR000873 -
Bda06g00683 395 Gene3D - 5 347 IPR042099 -
Bda06g00683 395 ProSitePatterns Putative AMP-binding domain signature. 165 176 IPR020845 -
Bda06g00683 395 PANTHER ACYL-COA SYNTHETASE 3 324 - -
Bda06g00683 395 PANTHER ACYL-COA SYNTHETASE 324 395 - -
Bda06g00683 395 SUPERFAMILY Acetyl-CoA synthetase-like 5 384 - -
Bda06g00683 395 PANTHER OXALATE--COA LIGASE-LIKE 324 395 - -
Bda06g00683 395 PANTHER OXALATE--COA LIGASE-LIKE 3 324 - -
Bda06g00683 395 Pfam AMP-binding enzyme C-terminal domain 324 371 IPR025110 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00683 K22133 AAE3; oxalate---CoA ligase [EC:6.2.1.8] - vvi:100256632 450.669
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00683 Bda-Chr6:9447641 Bda09g00213 Bda-Chr9:3006493 1.02E-19 dispersed
Bda09g00040 Bda-Chr9:603132 Bda06g00683 Bda-Chr6:9447641 4.17E-31 transposed
Bda06g00637 Bda-Chr6:8864380 Bda06g00683 Bda-Chr6:9447641 5.90E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g689 . Blo15g00167 . . . Bpe07g00938 . . . . . Cma15g01097 . Car15g01008 . . . . . . . . . . Cla01g00434 Cam01g0457 Cec01g0446 Cco01g0468 Clacu01g0456 Cmu01g0435 Cre09g2077 . . . . . . Chy09g01213 . . . Bda06g00683 . . . . Bma12g01121 . . Cmo15g01155 . . . . . Cpe13g00254 Bhi12g00510 . . Lac11g0027 Hepe06g0701 . Lcy12g0025 . . . . . . . . . . Cme09g01750
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002220 2 2 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 3 3 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00683 Bda_Chr06 FPKM 0.0 0.0 3.633096 2.42334 9.01604 8.088971 6.228674 0.0 0.0