Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00688 ATGGCAGCTGAGCTTCCTCTTCGAAGCCACAAGGGCTTGATTGTATATTTATCACATGCTAATGAAATGTTTGATACCCGTGACATCAAGATGAATTTCGTTGACTTGGCCGGTTATGAGGATGCTAGAAGGAAAAGTAGCGATGGTCTGAATTTTGTGGAGATTAGTAAAGTTAACAAGTCTATATATGCCTTAATGAATGTTTTATATGCTTTGAACATTAATGATAGCCATGTTCCTTACCGAGAAAGCAAAGTTATGCGCATGCTACGAGATTCCTTTGAAAAAAATAGCAAAATTGTAGTAGTTGCATGCTTGAACCCATATTTTTGCCAAGATTCTATTTATATGGCAAGTTTGGGATCTCGTTTATGTCAAGGAAACAGCAGAGATATTTCAGGCTTCACTCGGAAAGTTAAAGTTTCCACTAGAAATTTAGGTTTGTCACAAATACCTGGGAGTGTCACTGTAAATGCGAAGAAACAAAACATCTCCCGAGTAGTTCATTCTGAGAAGAAACCACAAGCCAATCCTAAGATGGCCACTCCTATAAGAAGAAGAAAATTATTTGTCAACGCACGTGACTTGCAAAAATCAAATAAGGAAAATATCTTGAAGAATTGTGATAGTAACATTGAGGAAGATGTCAACGTAAAAAAGGCTGCAGAAGAAATTACTTCCAACGAGATCAGTAGCATAGCCAAATCATGCATCGTAGGAGTAGATAGTAATCTCGTTAATTTGGCAGCAGAGGAGTTTTCTCTTACCATGAGCAGTAGTAAAGAAAGATCAGATGATAACATAGATGACGGATCGACAAGTTTATTGACCAATATCAGGGACCATATCGAAGAAGTTAGTTCAAAAATCGAAAGAGCAAATGAAGAATGGTCTCCTAAAGATGATGTGAAGATAGCAAAGGAGAACGTTAGTTCACAAATCAATGAGACTAGATCTCCACCATTGAGTTCAAGATTACGAGATCTTACTAACGAGATGAGATCTTTATATTCTGCAAGACCATTATCCATGAACATTACTCACATCTGTGAAACTCCATCCTCCGATTTATGCTCCATTAGTTTCGTGGAATATCAAACTCCAGTAAGGAAAGAGAACATTATCGGCAACGATGGACATGATGCTGCTCGTTTTAACAGTCCGTGGGAAAGATTCAGCTCCCGTAGTAAAGGAGTACAGAATTCCCTTGTTGAAGACTATCTAAAATTTCTGAATACCGCAAACAAGGAAGAGCTTACAAAATTGAAGGGCATTGGGGATAAGAGAGCAACTGCAATTATCGAATTCCGCGATGCTTCTCCGGAGCCATTTAAGAGTCTTGATGATTTGAAAGAGATAGGACTCTCCGCAAAGCAGATAAAGGGACTGCTTAGGAAGGAAATGGGAGGTCTATTCAACTAA 1422 38.47 MAAELPLRSHKGLIVYLSHANEMFDTRDIKMNFVDLAGYEDARRKSSDGLNFVEISKVNKSIYALMNVLYALNINDSHVPYRESKVMRMLRDSFEKNSKIVVVACLNPYFCQDSIYMASLGSRLCQGNSRDISGFTRKVKVSTRNLGLSQIPGSVTVNAKKQNISRVVHSEKKPQANPKMATPIRRRKLFVNARDLQKSNKENILKNCDSNIEEDVNVKKAAEEITSNEISSIAKSCIVGVDSNLVNLAAEEFSLTMSSSKERSDDNIDDGSTSLLTNIRDHIEEVSSKIERANEEWSPKDDVKIAKENVSSQINETRSPPLSSRLRDLTNEMRSLYSARPLSMNITHICETPSSDLCSISFVEYQTPVRKENIIGNDGHDAARFNSPWERFSSRSKGVQNSLVEDYLKFLNTANKEELTKLKGIGDKRATAIIEFRDASPEPFKSLDDLKEIGLSAKQIKGLLRKEMGGLFN 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9507818 9511234 - Bda023985.1 Bda06g00688 8270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00688 473 Pfam Kinesin motor domain 8 109 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda06g00688 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 113 IPR027417 -
Bda06g00688 473 SMART HhH1_4 417 436 IPR003583 GO:0003677|GO:0006281
Bda06g00688 473 PANTHER KINESIN-RELATED 4 223 IPR027640 GO:0003777|GO:0007018
Bda06g00688 473 PANTHER KINESIN-RELATED 300 463 IPR027640 GO:0003777|GO:0007018
Bda06g00688 473 SUPERFAMILY RuvA domain 2-like 399 463 IPR010994 -
Bda06g00688 473 Coils Coil 276 296 - -
Bda06g00688 473 PRINTS Kinesin heavy chain signature 79 100 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda06g00688 473 PRINTS Kinesin heavy chain signature 30 48 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda06g00688 473 Pfam Helix-hairpin-helix motif 411 459 - -
Bda06g00688 473 ProSiteProfiles Kinesin motor domain profile. 1 127 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda06g00688 473 PANTHER BNAA09G05100D PROTEIN 4 223 - -
Bda06g00688 473 Gene3D - 398 470 - -
Bda06g00688 473 Gene3D Kinesin motor domain 3 122 IPR036961 -
Bda06g00688 473 PANTHER BNAA09G05100D PROTEIN 300 463 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00688 K10403 KIF22; kinesin family member 22 - jre:109021216 362.073
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00688 Bda-Chr6:9507818 Bda05g00967 Bda-Chr5:58146851 6.42E-21 dispersed
Bda06g00688 Bda-Chr6:9507818 Bda01g00576 Bda-Chr1:32754377 1.74E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g714 . Blo15g00172 . . . Bpe07g00933 . . . . . Cma15g01088 . Car15g01000 . . . . . . . . . . Cla01g00444 Cam01g0467 Cec01g0456 Cco01g0478 Clacu01g0466 Cmu01g0444 Cre09g2068 Cone1ag1166 Cone5ag0876 . . . Csa05g00279 Chy09g01230 . . . Bda06g00688 . . . . Bma12g01117 . . Cmo15g01148 . . . . . Cpe13g00262 Bhi12g00497 . . . . . Lcy12g0037 . . . . . . . . . . Cme09g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009133 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34