Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00689 TTGGGATGCTTAGTTTTTATTTGGGTTTTATTCCAGATGAAGTCTTACATTTGGCTTCAAACTGCTGATGGTTCAATTCAACAAGTAGAAGAAGAGGTTGCTATGTTTTGTCCATTGATATGTTGGGAAGTGCTTCAAAAAGGGATGGGATCTTCCAAAAACTATGCCATATCTCTTCCACAGCGAGTGAATCCTTTTATCTTGGGCTTAATACTTGACTATTGCCGGTTTCATCAAGTACCAGGTCATTCTAATAAGGAGCGCAAAAATTTTGATGAAAAATTCATTCGGATGGACACAAAAAGGTTGTGTGAATTGACATCAGCTGCTGATAGCCTTCAGTTAAAGCCTTTGGTTGATCTAACTAGCCGAGCACTTGCTCGAATAATTGAAGGAAAAACTCCTGAGGAAATCAGAGAAACATTTCATTTACCAGATGATCTAACAGAGGAGGAAAAGTTGGAGCCCCTAAGAAATATAGCTGATGATCCTCGTATACGACTTTTGAATCGTTTATATGCTAGAAAGAGAAAGGAGTTAAAGGAACGTGAGAAATTGAAGAATACTGAGATAGAAGAGGAGCATGCGGATGACCGCTCAGTGGATGACCTTCTGTCATTCATAAACGGCGAAGTCAGAGATTCAAAGGCAGGCAAAGCCAATAAAACTAAAAAGAAAAACCGTAGAAGAAAAGATCAACCTAAGGATCCTTCTTCGAGTAATAATAATGGTAATCGTAGTAAGGATTTGGATGCTCTTCCTTCTACTAGCCATAATGGCAAGGTTGACGAAACTTCGGGGACATCTTCCAGTGAAACGTTAAAGTTGCAACGTTTTGCAGCTGGAAATTTTTCTCCAAGACTTGATTTTGAAGATGGTGACATTGATGACGACTTAGATCCTGCAATGAAAGAGAAACTTGACAGAGAGGTAGAGGATTTTGCTCGAAGATTGAACTCAGATTGGCCAGAAAGAGTGCAGGAATTTCTGTCCCTGGGCCAAGAAAGAAATTTTGTTTCAGTAACTATGAATGGCAATGGCTCCACACACAGATATTCAAGTATGTTCATTGTA 1074 39.29 LGCLVFIWVLFQMKSYIWLQTADGSIQQVEEEVAMFCPLICWEVLQKGMGSSKNYAISLPQRVNPFILGLILDYCRFHQVPGHSNKERKNFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNIADDPRIRLLNRLYARKRKELKEREKLKNTEIEEEHADDRSVDDLLSFINGEVRDSKAGKANKTKKKNRRRKDQPKDPSSSNNNGNRSKDLDALPSTSHNGKVDETSGTSSSETLKLQRFAAGNFSPRLDFEDGDIDDDLDPAMKEKLDREVEDFARRLNSDWPERVQEFLSLGQERNFVSVTMNGNGSTHRYSSMFIV 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9513653 9516433 - Bda033767 Bda06g00689 8271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00689 358 MobiDBLite consensus disorder prediction 237 274 - -
Bda06g00689 358 PANTHER SKP1 12 274 IPR016897 GO:0006511
Bda06g00689 358 SMART skp1_3 14 115 IPR001232 GO:0006511
Bda06g00689 358 MobiDBLite consensus disorder prediction 212 274 - -
Bda06g00689 358 Pfam Skp1 family, dimerisation domain 116 153 IPR016072 GO:0006511
Bda06g00689 358 SUPERFAMILY Skp1 dimerisation domain-like 89 158 IPR036296 GO:0006511
Bda06g00689 358 PANTHER OS03G0107000 PROTEIN 12 274 - -
Bda06g00689 358 Coils Coil 169 189 - -
Bda06g00689 358 SUPERFAMILY POZ domain 15 79 IPR011333 -
Bda06g00689 358 Pfam Skp1 family, tetramerisation domain 17 79 IPR016073 GO:0006511
Bda06g00689 358 Gene3D Potassium Channel Kv1.1; Chain A 10 160 IPR011333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00689 - - - vvi:100247347 533.487
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00689 Bda15g00715 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00689 Bda-Chr6:9513653 Bda14g00619 Bda-Chr14:4656836 1.16E-16 dispersed
Bda15g00715 Bda-Chr15:10549330 Bda06g00689 Bda-Chr6:9513653 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g719 Blo06g01134 . . . . Bpe07g00932 . . . . . Cma15g01085 . Car15g00998 . . . . . . . . . . . . . . . . . Cone1ag1171 Cone5ag0879 Cone14ag0074 Cone15ag0077 . . . . . . Bda06g00689 Bda15g00715 . Bpe12g00438 Bma08g00296 Bma12g01116 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003335 2 5 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 7 3 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00689 Bda_Chr06 FPKM 5.821596 8.187112 9.935439 11.111009 13.665209 13.185163 9.779467 9.46886 9.162155