Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00690 TCAAGGCTGAATACCATCATCAGAGAGAGAGAGATGTGGGTTTTCCGGAGAAGGGGGGCTTCTGGGTTTTCAGCTTCTTCCACAGATGAACAAGTTACAGAAGGGATCGATGGATCTGGTCTCACTGCCATTGTTACAGGAGCATCGAGTGGTATCGGCACTGAAACTGCCCGTGTTCTTGCATTGCATGGAGTACATGTAGTTATGGGCGTAAGGAATATTGATGCTGGCAAAGATGTTAAAAAAGCAATAGTTCAACAGAAACCAACGGCAAGAGTCGATGCCATGGAGTTGGATCTGAGCTCAATTGCGTCAGTACGGAAATTTGCTGAAGATGTCAAGTCCTTAGATCTTCCACTCAACATTCTCATTAATAATGCAGGGGTTATGGCCACACCATTCATGCTTTCGAAAGACAATATTGAACTACAATTTGCAACAAACCATTTAGGGCATTTTCTTTTGACGAATCTATTATTGGAGACCATGAAAAAAACTGCAGCTAAAAGCGGGAGGGAAGGGAGGATTGTCAATGTTTCATCACGGCGTCATCGATTCTCCTATCGAGAGGGTATTCGTTTCGATAAAATCAACGATCAAGCGAGTTACAACAGCTTATCTGCATATGGTCAATCAAAACTTGCTAATGTTTTGCATGCTTTTGAACTTTCCAGACAGCTAAAGGAAGATGGTATACAGATAACTGCGAATTCAGTTCATCCCGGATTCATTGCCACCAATCTCTTTCGACATCTCAACATCATTAATGGTAAGTTGTCAATTTTTTTGATCTATAACTTGATTTTTTCCTTTTTTAATGGTTATGAATTATATTTTGAGTTTTCACTTCTCTTTGGTTTTGATGCAGGTCTTGTTGGCATTTTTGGTAAACACATAGCAAAAGACATTCCACAGGGTGCCGCTACTACATGTTATGTGGCATTGCATCCAGACCTCCAAGGCGTTACCGGGCAGTATTTTAGCGATAGTAATGTAGCGAGAGCGAGCTCACAAGGTAATGATAGAGAACTTGCAAAGAATCTCTGGGATTTTAGTCTTAAGTTGATCAATTAA 1074 40.78 SRLNTIIREREMWVFRRRGASGFSASSTDEQVTEGIDGSGLTAIVTGASSGIGTETARVLALHGVHVVMGVRNIDAGKDVKKAIVQQKPTARVDAMELDLSSIASVRKFAEDVKSLDLPLNILINNAGVMATPFMLSKDNIELQFATNHLGHFLLTNLLLETMKKTAAKSGREGRIVNVSSRRHRFSYREGIRFDKINDQASYNSLSAYGQSKLANVLHAFELSRQLKEDGIQITANSVHPGFIATNLFRHLNIINGKLSIFLIYNLIFSFFNGYELYFEFSLLFGFDAGLVGIFGKHIAKDIPQGAATTCYVALHPDLQGVTGQYFSDSNVARASSQGNDRELAKNLWDFSLKLIN 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9530779 9536235 + Bda023987.1 Bda06g00690 8272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00690 357 CDD retinol-DH_like_SDR_c_like 40 349 - -
Bda06g00690 357 Pfam short chain dehydrogenase 42 183 IPR002347 -
Bda06g00690 357 PRINTS Glucose/ribitol dehydrogenase family signature 168 184 IPR002347 -
Bda06g00690 357 PRINTS Glucose/ribitol dehydrogenase family signature 232 249 IPR002347 -
Bda06g00690 357 PRINTS Glucose/ribitol dehydrogenase family signature 118 129 IPR002347 -
Bda06g00690 357 PRINTS Glucose/ribitol dehydrogenase family signature 42 59 IPR002347 -
Bda06g00690 357 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 13 356 - -
Bda06g00690 357 PANTHER RETINOL DEHYDROGENASE 13 356 - -
Bda06g00690 357 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 40 333 IPR036291 -
Bda06g00690 357 Gene3D - 35 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00690 - - - vvi:100247484 445.277
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00269 Bda-Chr2:41067212 Bda06g00690 Bda-Chr6:9530779 3.91E-28 dispersed
Bda06g00690 Bda-Chr6:9530779 Bda11g01661 Bda-Chr11:50708418 5.10E-83 dispersed
Bda03g01750 Bda-Chr3:56873858 Bda06g00690 Bda-Chr6:9530779 8.36E-73 transposed
Bda07g00287 Bda-Chr7:4014047 Bda06g00690 Bda-Chr6:9530779 4.18E-25 transposed
Bda08g00502 Bda-Chr8:5097685 Bda06g00690 Bda-Chr6:9530779 1.49E-151 transposed
Bda06g00690 Bda-Chr6:9530779 Bda07g01892 Bda-Chr7:36330986 5.08E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g724 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00120 . . . . Bda06g00690 . . . . . . . Cmo15g01146 . . . . . . Bhi12g00031 . . Lac11g0044 . . Lcy12g0041 . . . . . . . Lsi09g00094 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00690 Bda_Chr06 FPKM 12.310071 12.046839 7.907077 7.613836 33.481358 28.75864 31.820642 6.209723 5.886429