Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00705 ATGGCGAACACCTGCCAACTGCCCTGCGACGGAGATGGCACTTGCATGGTCTGCAAGGCGAAGCCTCTGGAGGAGGAGAAACTCATTTGCAAAACTTGCGCTACACCGTGGCATGTTACCTGTCTCTCCACCCCTCCTGAAACCCTAGCTTCGACTCTCCAATGGGATTGCCCCGACTGTATTCCGCAGTCCGGGGACTGCGGAGCCAGCGATAATGTCCCCGTAGACGATTGCTCCAGCGGCCTGATCGCCGCTATCCGAGCGATTGAGGGTGATGCTTCGCTGACTGATAGAGAGAAGGCGAAGAGGCGTCAGGAGCTTTTGAGCGGGAAGAATCGGTCTGAGAATGGGGTAGAAAATTTGAGCAAGGTTAAGCGGAAGAGAAGCGATGATGTTTTGGGAGTTCTTGACGAGAGTCTGAACTGTTCATTTTGTATGCAGTTGCCTGAAAGGCCTGTCACGACTCCTTGTGGACACAATTTCTGCCTAAAATGCTTCAAAAAATGGATTGGACAAGGAAAAAAAACCTGTGCAAAATGTCGCTGCTTGATTCCTTTCAAAATGGCGAGTCAGCCTCGCATCAATTCTGCTCTTGTAGCTGCGATTCGTATGGCCAAGATGTCAAAGTCAAATGTGGCTGGTGACTCTCAAAAAGTTTGTCATTTTGTACACAATCAGCATAGGCCAGATAAGGCATACACTACAGAGCGGGCACAGAGGAGCGGAAAGGCCAACGCAGCGAGTGGGAAAATATTTGTTACAATCCCATCTGATCATTTTGGACCTATCCCGGTGGAAAATGATCCTGGGAGAAATCAGGGTGTGCTAGTTGGTGAAACATGGGAGGATAGGTTGGAGTGTCGACAATGGGGAGCTCACTTTCCTCATGTGGCAGGCATCGCAGGTCAGTCAGACTATGGTGCACAATCAGTAGTTCTTTCTGGAGGTTACCAGGATGACGAGGATCACGGAGAGTGGTTTCTCTACACTGGAAGTGGTGGTAGAGACCTTAGTGGCAATAAACGGACAAGCAAGGACCAGTCATTTGACCAGAAATTCGAGAAAATGAACAAAGCACTCAAAGTTAGTTGCTTGATGGGTTATCCTGTTAGGGTAGTTCGAATGACTAAACATTTCCTAATAGGAGCATGTCTGAATGGAGTTTTCGTAAATAGTGAACAAGGGAGGCGAGAAGCATATCTTCATAATAGAATTTTTATCATGGAAGTTAGATTCATTAGAACTTTAGAAATAGATGGTTCAAGACTCATTGTTTTATGTTTTTTTAAGAAAAAACAAATTATGATGATTATTGCATTGAGATCCATCTATGATATACCTTTATTTTTTATTTGTAGGTCACACAAAGAGAAACGCTCTTCATATGCCCCAGAGAAAGGTTTGCGGTATGATGGAATATATAGGATTGAGAAATGTTGGAGAAAAGTAGGAGTCCAGGGCTTTAAGGTGTGTAGGTACTTATTTGTCAGATGTGACAATGATCCAGCTCCTTGGACCAGTGATGAACATGGAGATCGGCCTAGACTCTTTCCTGGCATTGGAGAATTGAAAAAAGCAATAGACATCACAGAGAGGAAAGGAAGCCCATCATGGGATTTCAATGAGGAAGATAATTGCTGGATGTGGAAGAAACCTCCACCAGCAAGCAAGAAATCAATTGACATAGAAGGTTCTGATTCAAGAAAGAGATCTATAAGAGCCATAAGAAAAGCCCAGAAAATAAATGTTCGAGACAGATTGTTGAAAGAATTTAGCTGCTCTATATGCAGGCAGGTAATGATTCAGCCCGTCACAACTCCATGTGCACATAATTTTTGCAAGACATGCTTGGAAGGCCGGTTTGCTGATAAGACATTCATGAGGGACAGAAGCAGAGGTGGAAGAACCCTTCGATGCCAAAAGAATATCATGATTTGTCCTTCTTGTCCTTTGGACATCTCTGATTTTCTTCAGGATCCTCAGGTAAATAGAGAGTTACTTGACGTAATCGAAACACTAAAAAGTCAGAATGAAGAGAATGGTGAGTCTGCCGACGAGTCACCTGAGGAGGAAATTACTGAAAAATCAGAGGAACCAAATAAGTACAATGAAACCGAGGTAGCGTTTCCCAGCCAAGTGAGTCCAAACAGAGGTCAAAAGCGAAAGAAAATCGACAAAAGGGAAGATGCTAATGCAGTTAAAGCTATAGACTCAGAAGTGGAGAAATCAGGATTATCTGAAGAATGTGATGAGTAA 2256 43.93 MANTCQLPCDGDGTCMVCKAKPLEEEKLICKTCATPWHVTCLSTPPETLASTLQWDCPDCIPQSGDCGASDNVPVDDCSSGLIAAIRAIEGDASLTDREKAKRRQELLSGKNRSENGVENLSKVKRKRSDDVLGVLDESLNCSFCMQLPERPVTTPCGHNFCLKCFKKWIGQGKKTCAKCRCLIPFKMASQPRINSALVAAIRMAKMSKSNVAGDSQKVCHFVHNQHRPDKAYTTERAQRSGKANAASGKIFVTIPSDHFGPIPVENDPGRNQGVLVGETWEDRLECRQWGAHFPHVAGIAGQSDYGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKMNKALKVSCLMGYPVRVVRMTKHFLIGACLNGVFVNSEQGRREAYLHNRIFIMEVRFIRTLEIDGSRLIVLCFFKKKQIMMIIALRSIYDIPLFFICRSHKEKRSSYAPEKGLRYDGIYRIEKCWRKVGVQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRLFPGIGELKKAIDITERKGSPSWDFNEEDNCWMWKKPPPASKKSIDIEGSDSRKRSIRAIRKAQKINVRDRLLKEFSCSICRQVMIQPVTTPCAHNFCKTCLEGRFADKTFMRDRSRGGRTLRCQKNIMICPSCPLDISDFLQDPQVNRELLDVIETLKSQNEENGESADESPEEEITEKSEEPNKYNETEVAFPSQVSPNRGQKRKKIDKREDANAVKAIDSEVEKSGLSEECDE 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9727526 9733274 + Bda024005.2 Bda06g00705 8287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00705 751 MobiDBLite consensus disorder prediction 718 743 - -
Bda06g00705 751 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Bda06g00705 751 CDD RING-HC 142 180 - -
Bda06g00705 751 ProSiteProfiles Zinc finger RING-type profile. 593 649 IPR001841 -
Bda06g00705 751 SUPERFAMILY RING/U-box 133 204 - -
Bda06g00705 751 MobiDBLite consensus disorder prediction 674 751 - -
Bda06g00705 751 Gene3D - 446 525 IPR036987 -
Bda06g00705 751 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Bda06g00705 751 SUPERFAMILY FYVE/PHD zinc finger 8 63 IPR011011 -
Bda06g00705 751 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 377 - -
Bda06g00705 751 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 450 740 - -
Bda06g00705 751 Gene3D - 241 405 IPR036987 -
Bda06g00705 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 61 IPR013083 -
Bda06g00705 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 579 704 IPR013083 -
Bda06g00705 751 Pfam SAD/SRA domain 270 377 IPR003105 -
Bda06g00705 751 Pfam SAD/SRA domain 451 500 IPR003105 -
Bda06g00705 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 210 IPR013083 -
Bda06g00705 751 SMART PHD_3 14 61 IPR001965 -
Bda06g00705 751 SUPERFAMILY PUA domain-like 244 383 IPR015947 -
Bda06g00705 751 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 377 IPR045134 -
Bda06g00705 751 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 450 740 IPR045134 -
Bda06g00705 751 ProSiteProfiles YDG domain profile. 270 497 IPR003105 -
Bda06g00705 751 SUPERFAMILY PUA domain-like 452 531 IPR015947 -
Bda06g00705 751 SMART G9a_1 265 501 IPR003105 -
Bda06g00705 751 SUPERFAMILY RING/U-box 586 677 - -
Bda06g00705 751 ProSitePatterns Zinc finger RING-type signature. 608 617 IPR017907 -
Bda06g00705 751 ProSiteProfiles Zinc finger RING-type profile. 142 181 IPR001841 -
Bda06g00705 751 Pfam RING-type zinc-finger 593 639 IPR027370 -
Bda06g00705 751 Pfam Zinc finger, C3HC4 type (RING finger) 142 180 IPR018957 GO:0046872
Bda06g00705 751 SMART ring_2 142 180 IPR001841 -
Bda06g00705 751 SMART ring_2 15 60 IPR001841 -
Bda06g00705 751 SMART ring_2 593 649 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda06g00705 Bda15g00700 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00705 Bda-Chr6:9727526 Bda13g00032 Bda-Chr13:524843 5.92E-11 dispersed
Bda15g00700 Bda-Chr15:10433153 Bda06g00705 Bda-Chr6:9727526 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00705 K10638 - nnu:104591868 701.049