Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00707 ATGGAGATGGAAATTGACCATTCGAAAAACAATGCTTCTGATCAGGATAATCCCAGATTCTCTATCAATGGTTTGAGGTATTGCACAGCCCGGTTGAGGAGGTTGTATAAATCTTTGAAGTTTACCCATGGCCGTGGAAAGTATACCCGCAGAGCTATAACTCTATCAACTATAAGTGAAGTGAGGTTTCTACACGTAGTTCTTTATACAGCAGAGAGAGCGTGGAGTCATGCGATGGAGAAAAGACAACTCCCAGGCGGCCCAAATGCACGTCAACGTGTCTATTTGATTGGCCGTCTAAGGAAGGCAGCAAAATGGGCTACGCTGTTTGCACAGTTATGTGCTGGAAAAGGAGACCCTAGAACCTCTTTGGAAGCTGAAGCTTATGCTTCATATATGACAGGGAACTTGTTGTTCGAAAGAGATCAAAGTTGGGATATTGCATTGATGAATTTCAAAAGATCTAGGGCTGTTTACGAGGAACTTGGGAAAGTTGGAGACATTGAAAATCAAGTGTTGTGTCGAGAGCGTGTTGAAGAGCTAGAGCCTAGTATTCGATACTGCCTGCACAAGATTGGACAGTCAAACTTGCAAGCCTCTGAACTTTTAAACATTGGAGAATTGGAAGGTCCTGGGCTGGATCTTTTTAAGGCGAAACTGGAGGTTGTTATGTCAGAGGCCAGATCTCAACAAGCTGCTTCAATGACTGAGTTTCATTGGCTTGGTCAGAAATATCCAATATCCAATGCAAAAACAAGAGTTGCCATTCTGAAAGCTAAAGATTTGGAGAAAGGCTTAAAAGGTTCAGAAGCAGATTCACACACAGCGGAAAAGAGACTAGCTATATTTGATAAAATCTTTGCTGCGTATCATGAGGCAAGGACTTCGATTCGCAGTGATTTGACTAGTGCTGGAAATGCCGAAAATGCCAAAGAAGATTTAAATGGTCTTGATAAAGCTGTCAGTGCTGTAATTGGACAAAGAACCATTGAACGCAACCTATTATTGGTGAAAATTGCTAAAAGTAAGCTTTCTCGACTTCATGAGGACAAGAATGAGAAAGTAACAAAGCCTGAGGAGCTGGTTCGCTTGTATGATCTTTTGCTACAGAATGTTGCTGATCTTTGTGATTTAGTAAGTTCTGGAAGAGATAAGAAACCGGAAGAGGTGCAATTTGCTGAAGAATGTGCTCTAAAAAGTTTGGTTTTCCGTGGAGAAAGGTGCTTTTACCTTGGCAAATCATACAGCTTGGCTGGGAAATGTGGAGAAGCTTATGCACTTTTTAGCCGTGCTCTCTCAGTTGCAAATGACGCCCTTCAGAAATTTAACAGTTTAAATGGTAGTGATAAGGAGATTATTAAAGAGTTGAAGGCATTACGCGATGAATGCAGATCGAACTGTTGTATTGAGCATGCAACTGGGATTATGGAGGAGATGAAGACTACAGACAATCTTTCGAAAAAGATATCCAATATATCGTTTGGAGCAGAAAAGTTGGACAAATTCCTTCTCCAAAATCTCAACGAGTATGAGTCAGCAGTCAATATTTCTAACATCAAGAATGCTCCTCGAATCGAACCATTTCCTCCTTCCTTCCAGGCGATTCCACGCAATCCCATCGTGGTGGATCTTGCCTATAATTTCATCGACTTCCCTTCCCTTGAGAATAGAGTGAAGAAGGACAAAAAGGGTTTTATCAGCAGGCTTTGGAGATGA 1716 41.55 MEMEIDHSKNNASDQDNPRFSINGLRYCTARLRRLYKSLKFTHGRGKYTRRAITLSTISEVRFLHVVLYTAERAWSHAMEKRQLPGGPNARQRVYLIGRLRKAAKWATLFAQLCAGKGDPRTSLEAEAYASYMTGNLLFERDQSWDIALMNFKRSRAVYEELGKVGDIENQVLCRERVEELEPSIRYCLHKIGQSNLQASELLNIGELEGPGLDLFKAKLEVVMSEARSQQAASMTEFHWLGQKYPISNAKTRVAILKAKDLEKGLKGSEADSHTAEKRLAIFDKIFAAYHEARTSIRSDLTSAGNAENAKEDLNGLDKAVSAVIGQRTIERNLLLVKIAKSKLSRLHEDKNEKVTKPEELVRLYDLLLQNVADLCDLVSSGRDKKPEEVQFAEECALKSLVFRGERCFYLGKSYSLAGKCGEAYALFSRALSVANDALQKFNSLNGSDKEIIKELKALRDECRSNCCIEHATGIMEEMKTTDNLSKKISNISFGAEKLDKFLLQNLNEYESAVNISNIKNAPRIEPFPPSFQAIPRNPIVVDLAYNFIDFPSLENRVKKDKKGFISRLWR 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9740971 9750621 - Bda024007.1 Bda06g00707 8289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00707 571 PIRSF SRP68 12 565 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
Bda06g00707 571 CDD SRP68-RBD 26 190 IPR034652 GO:0003723
Bda06g00707 571 Pfam RNA-binding signal recognition particle 68 26 549 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
Bda06g00707 571 PANTHER SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN 26 570 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
Bda06g00707 571 Gene3D - 7 194 IPR038253 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00707 K03107 SRP68; signal recognition particle subunit SRP68 - csv:101217111 887.486
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g25 . . Bda06g00707 . . . . Bma12g01097 . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0261 Cone19ag0246 . . . . . Blo15g00188 . . Bpe07g00909 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005497 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00707 Bda_Chr06 FPKM 22.657614 23.477398 38.802639 38.212242 17.676266 16.747356 15.820928 69.977325 68.518105