Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00733 GGTACTAATCCGATGATGGAAAAGCCAGGTAGTTCATTTTCTTTGTGGAGTCGCTTAGCTCGTAATCCATACTCTAATTTTAAGACGGTCACGCCTTGGTGTAGGCTACTTTCACAATTTGGTCAGAACCCGAATATTCTCATTTCCCATGTGAATTTCACAATTGGATCATGCAGATTTAGCAATTTTCCATTAAAAGATCAGACTATTAGTGGCACTCTATGCAAAATAAAACAAACGCAGGTAGAGGGAACCACAATACCCGTGCTAGAGACTATAGGGAGCAAAGGATCAGTGATTGTAAATGGGTTAATTGAGAAAAATAATTCAAAATGTATACTTAACTCGGGTGACGAGGTAGTCTTTAGTGCATTGGGGAACCATGCCTATATTTTCCAGCAACTTACAACTGAATCTCAAATTATAGCTGATTCTACATTGGCATCTTTGTCAAGCCCTAGGATCGAAAGTAAAATCCATCAGGGGACTGATTTGCCTTCTCATTCTGCTGCTCGTGATGTTCTTGAAGCCATCTCAACTCCAGATTTAAGAGACCATAAAGCTGAAGATGTGGAAACAATCAACAAGAATCTTTCTCCTGACAGAAAAATGGACTCTGGTGTAGAGGCATGCAATGTAAAACATTCTGGGGAATTTCTTCAGGATGTAGCTCCATCAACTAATTGTAAACTGAAATTGAGCATCTGTAAACAGGTAATGGAAGAAAGAAACCAGCGGACTGGACATTTGCAGCGAGCATCAACTCCTGACATGCATTTGTTGCGTCAATCGATTTTAGAAGACATTCTTGCAGCAGTTGGCATGCCTTCGTTGCATGAAGTGTTTTTAGAAGACATTCTTGCTGGAATAGTTGATGGCACAGACTTGGGAGTTTCTTTTGAAAAGTTCCCTTATTATTTGAGTTTTATAAAATGTTTTTATCAGGTAGTGAACTGTGTGAGCAGAAGTTCTCCATTTATTTTGTTTGTGAAAAACGCTGAAAAATCTCTTTTAAAGAATTTTCATGTATACTCTAATTTCGAGAGTAAGCTGGAGAAGCTTCCAGATAGTGTCATAGTAATTGGTTCTCACGCTCATACTTATAAAGACTCTTGCCAGGAGAAGTTGTATCCTGATGATCAGGTTTTGACAAAATTTGTCGCCAACCAAATTGTTCATCTTGATTTATCTGTCTTTGATGATTTAAGACATATTGGTCCTGATATGGGGAAGAAAGTTCAATCCCAAATGAAGGTGCTTGCCAAACTTTTCCCGAATAAAGTAACAATTCACATGCCACAGGACGAGGCACTTCTTGTATCTTGGAAGCATCAACTTGATCTTGACATAGAAATCATGAAAATGAAAGAAAACCTGAATCACTTGAGAGCTGTCTTGGGTCAGTGTGGAATGGATTGTGAAGGTCTAGGTTCTCTATGCATAGAGGATCAAACGCTAACTGATGAGCGTGCAAAGAAGGTAGTGGGGTGGGCACTAAGCCATCATTTAATGCACAATGCTCCAGCTGATATTGATGGTCCACTTATCTTGTCTAGTGAGAGTATCCAGTATGCGGTTGGATTATTATATGCTCTCCAGAATGAATCTAAAAGCATAAAGAAGTCTCTTAAGGATGTTGCCTCCGAAAACGAATTTGAGAAAAGACTCGTAGCTGATGTTGTTCCACCTACTGACATTGGAGTTACATTTGATGATATTGGAGCCATGGAAAATGTCAAGGATACTTTGAAGGAATTAGTGATGCTCCCATTGCAAAGGCCAGAACTATTCTGCAAGGGGCAACTAACAAAGCCATGCAAAGGCATACTATTATTTGGTCACCCTGGTACTGGTAAGACAATGCTTGCAAAAGCTGTTCCCACTGAAGCTGGTGCAAATTTCATCAGCGTTTCTACGTCTAGCATCACTTCCAAGTGGTTTGGTGAAAGTGAAAAGTATGTGAAGGCCGTCTTCTCATTGGCTAGTAAAATTGCTCCGAGTGTCATATTTGTTGATGAAGTTGACAGCATGCTGGGGCAGAGGGAAAGTCGTGGTGAGAACGAAGGCACGCGAAAGATGAAAAATGAATTTATGGTGAATTGGGATGGATTACGAACCAAAGATACAGAACGAGTACTTGTTCTTGCAGCTACAAACAGACCTTTTGACTTAGACGAGGCTGTCATTCGGAGACTGCCACGAAGACTAATGGTAAATTTGCCTGACACCCCAAATAGATCAAAAATTTTGAAAGTTATCCTGGCAAAGGAGGATTTATCCCCCGACTTCGATTTTGATGCGATTGCAAACATGACAAAGGGGTATTCCGGCAGTGATCTTAAGAATTTATGTGTAGCTGCTGCTCATCGACCGATTAAAGAGATATTGGAAAAAGAAAAGAAGGAGAGAGCCATCGCACTGGCAGAAGGTCGGCCTGCTCCTGGATTGAGTGGAAGTGCTGATATAAGACCTATAAACATGGAGGACTTCAAATATGCTCATGAACGGGTATATCCGAGTGTTTCATCGGAGTCTGCAAACATGGCAGAGCTTACGCAGTGGAATGAGCTATACGGCCAAGGGGGTTCCAGAATAAAGAAAGAGCTGAGTTACTTCATGTGA 2622 40.73 GTNPMMEKPGSSFSLWSRLARNPYSNFKTVTPWCRLLSQFGQNPNILISHVNFTIGSCRFSNFPLKDQTISGTLCKIKQTQVEGTTIPVLETIGSKGSVIVNGLIEKNNSKCILNSGDEVVFSALGNHAYIFQQLTTESQIIADSTLASLSSPRIESKIHQGTDLPSHSAARDVLEAISTPDLRDHKAEDVETINKNLSPDRKMDSGVEACNVKHSGEFLQDVAPSTNCKLKLSICKQVMEERNQRTGHLQRASTPDMHLLRQSILEDILAAVGMPSLHEVFLEDILAGIVDGTDLGVSFEKFPYYLSFIKCFYQVVNCVSRSSPFILFVKNAEKSLLKNFHVYSNFESKLEKLPDSVIVIGSHAHTYKDSCQEKLYPDDQVLTKFVANQIVHLDLSVFDDLRHIGPDMGKKVQSQMKVLAKLFPNKVTIHMPQDEALLVSWKHQLDLDIEIMKMKENLNHLRAVLGQCGMDCEGLGSLCIEDQTLTDERAKKVVGWALSHHLMHNAPADIDGPLILSSESIQYAVGLLYALQNESKSIKKSLKDVASENEFEKRLVADVVPPTDIGVTFDDIGAMENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGHPGTGKTMLAKAVPTEAGANFISVSTSSITSKWFGESEKYVKAVFSLASKIAPSVIFVDEVDSMLGQRESRGENEGTRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDTPNRSKILKVILAKEDLSPDFDFDAIANMTKGYSGSDLKNLCVAAAHRPIKEILEKEKKERAIALAEGRPAPGLSGSADIRPINMEDFKYAHERVYPSVSSESANMAELTQWNELYGQGGSRIKKELSYFM 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9973979 9985277 + Bda024036.1 Bda06g00733 8315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00733 873 Gene3D - 567 847 IPR027417 -
Bda06g00733 873 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 19 308 - -
Bda06g00733 873 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 310 873 - -
Bda06g00733 873 ProSitePatterns AAA-protein family signature. 712 731 IPR003960 GO:0005524|GO:0016887
Bda06g00733 873 SUPERFAMILY SMAD/FHA domain 32 128 IPR008984 GO:0005515
Bda06g00733 873 Pfam ATPase family associated with various cellular activities (AAA) 609 738 IPR003959 GO:0005524|GO:0016887
Bda06g00733 873 SMART AAA_5 605 742 IPR003593 -
Bda06g00733 873 CDD AAA 574 740 - -
Bda06g00733 873 Gene3D - 741 835 - -
Bda06g00733 873 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN-RELATED 19 308 - -
Bda06g00733 873 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN-RELATED 310 873 - -
Bda06g00733 873 Gene3D - 32 142 - -
Bda06g00733 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 846 IPR027417 -
Bda06g00733 873 Pfam AAA+ lid domain 762 797 IPR041569 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00733 - - - cit:102607540 838.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00733 Bda-Chr6:9973979 Bda10g00680 Bda-Chr10:41025769 3.67E-31 dispersed
Bda15g00666 Bda-Chr15:10139245 Bda06g00733 Bda-Chr6:9973979 1.59E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g809 Blo06g01180 Blo15g00212 . . . . . . . . Cma02g01088 . Car02g00831 . . . . . . . . . . . . . . . . . . . Cone5ag0903 . . . . . . . . Bda06g00733 . . Bpe12g00487 . . . Cmo02g01109 . . . . . . . Bhi12g00765 . . . . . . . . . . . . . . . . .
Vvi17g126 . . Bda06g00733 . Bpe12g00487 . . . Cmo13g00832 . . . . . . Cpe20g00310 . . . . . . . . . . . . . . . Cone2ag0968 . . Cone19ag0203 Lsi02g00499 Csa01g00959 . . . Blo15g00077 . . Bpe07g00884 . . . . . . Cma13g00801 . Car13g00649 Car18g00225 . . Bhi08g01473 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002923 2 8 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 4 2 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00733 Bda_Chr06 FPKM 5.810277 5.40059 6.77277 7.266678 5.709257 6.23572 6.452699 11.95388 13.534018