Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00736 ATGGAGTCACTGTTTCTTCTCTACGAATCCGCTTCCGGATATGCCCTATTTCACGCTCATGGACTTGACGAGATTGGCCAGAACACCGAAGCTGTTCGGAATTCCATCGCCGACCTTAACCGTTTCGGCAAGGTCGTTCAGCTCAGAGCTTTTCATCCTTTTGAGTCGGCTCTCGACGCGCTTAACCAGTGCAACTCGGTCTCCGAAGGTGTAATGACGGATCAGCTAAGGAGTTTTCTGGAAATTAATCTCCCAAAGGTGAAGGAAGGTAAAAAAGCAAAGTTCATTTTGGGACTAGCCGAACCAAAGATTGGCTCGCACATATTAGAAGAGACTAAAATACCTTGCCAAAGCAATGAGTTTGTTCTAGAGCTGCTCCGTGGGGTGCGACTGCATTTCGATAGGTTCATCAAGGACCTTAAGCCTGGTGATTTGGAAAAGGCACAACTTGGTCTGGGCCACAGCTATAGCAGAGCTAAGGTTAAGTTCAACGTTAATCGAGTTGATAATATGGTGATTCAAGCAATTTTCCTTCTAGATACTCTTGACAAGGATGTTAATTCTTTTGCCATGCGAGTCAGAGAGTGGTACTCATGGCATTTTCCTGAGTTGGTCAAGATTGTCAATGACAATTATCTCTATGCTAAAGTTTCAAAATATATTGAGGACAAATCAAAGTTGTCAGAAGAAAATATTCAGGGCTTGGTTGACATACTTGGTGATGAAGACAAGGCAAAAGAGATTGTTGAAGCTGCCAAGGCATCTATGGGACAGGATTTGTCTCCAATTGACTTGATTAATGTTCAACAGTTTGCACAGAGGGTAATGGATCTATCTGAATATAGGAAGAAGCTTTTTGATTATCTTGTCACTAAAATGAATGACATTGCACCAAACTTGGCCTCTTTGATTGGTGAAGTTGTTGGAGCACGTTTAATATCTCATGCTGGAAGTCTCACAAATTTGGCCAAATGCCCTTCATCTACCCTTCAGATTCTTGGTGCAGAGAAGGCACTCTTTAGGGCACTGAAAACCAAAGGAAACACTCCAAAATATGGCCTGATATTCCACTCATCTTTCATTGGTCGAGCATCTGCTCGGAACAAAGGTCGAATGGCTCGTTATCTTGCAAATAAGTGTTCAATTGCATCTCGTATTGATTGTTTTGCAGATCATAGCACAACTGCCTATGGGGAGAAACTTCGTGAACAAGTAGAAGAGCGTCTTGACTTCTACGACAAGGGAATTGCCCCTCGCAAAAATATTGATGTGATGAAAGCTGCAATGGAAAGTGCACAAGACCAAGGGACAGAGATGGAAGTAGATGCTGCTAACGAAGCTTTGGCCAAGAAAAGTAAGAAAAAGAAGTCAAAACCTGCTGCAACGGAAGATACTGAACCAATCGCTGAGGAAAAACTGGCTGCTAAAATAAATGATGATGCTAATGTGGATGGAAAATCCGAAAAGAAGAAAAAGAAGGAGAAGAGAAAACTGGAAATGGAACAGCAGCAACAACAGAACTCGGAAAACTTGAACGGGAACGGAGTTAATGGTCTGGAGAATGGAAAAGCCAAGAAGAAAAAGAAGAGCAAAGACGAAAATGGAGAGGTTGAATTAACGGCCACCACTGACGGCAAAAAGAAGAAGAAAAAGAAGGTACGAAGTGAAGGTAGCGAATAG 1680 42.44 MESLFLLYESASGYALFHAHGLDEIGQNTEAVRNSIADLNRFGKVVQLRAFHPFESALDALNQCNSVSEGVMTDQLRSFLEINLPKVKEGKKAKFILGLAEPKIGSHILEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDVNSFAMRVREWYSWHFPELVKIVNDNYLYAKVSKYIEDKSKLSEENIQGLVDILGDEDKAKEIVEAAKASMGQDLSPIDLINVQQFAQRVMDLSEYRKKLFDYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTKGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFADHSTTAYGEKLREQVEERLDFYDKGIAPRKNIDVMKAAMESAQDQGTEMEVDAANEALAKKSKKKKSKPAATEDTEPIAEEKLAAKINDDANVDGKSEKKKKKEKRKLEMEQQQQQNSENLNGNGVNGLENGKAKKKKKSKDENGEVELTATTDGKKKKKKKVRSEGSE 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10022621 10025633 + Bda024041.1 Bda06g00736 8318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00736 559 MobiDBLite consensus disorder prediction 448 559 - -
Bda06g00736 559 MobiDBLite consensus disorder prediction 503 517 - -
Bda06g00736 559 ProSiteProfiles Nop domain profile. 296 414 IPR002687 -
Bda06g00736 559 MobiDBLite consensus disorder prediction 457 502 - -
Bda06g00736 559 Pfam NOP5NT (NUC127) domain 5 70 IPR012974 -
Bda06g00736 559 SUPERFAMILY Nop domain 164 413 IPR036070 -
Bda06g00736 559 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 4 549 IPR045056 GO:0030515|GO:0031428|GO:0032040
Bda06g00736 559 PANTHER BNACNNG34340D PROTEIN 4 549 - -
Bda06g00736 559 MobiDBLite consensus disorder prediction 521 545 - -
Bda06g00736 559 Coils Coil 483 511 - -
Bda06g00736 559 Gene3D Nop domain 300 412 IPR042239 -
Bda06g00736 559 SMART NOSIC_2 171 223 IPR012976 -
Bda06g00736 559 Gene3D - 142 299 - -
Bda06g00736 559 Pfam snoRNA binding domain, fibrillarin 178 410 IPR002687 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00736 K14564 NOP56; nucleolar protein 56 - vvi:100267928 823.928
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00736 Bda-Chr6:10022621 Bda15g00662 Bda-Chr15:10113421 0 dispersed
Bda06g00736 Bda-Chr6:10022621 Bda12g00391 Bda-Chr12:4576792 3.38E-110 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g142 . . Bda06g00736 . . . . Bma12g01076 . . Cma10g00072 . Car10g00060 . . . . Bhi02g00536 . . . Hepe09g0060 . . Cla06g01731 Cam06g1922 Cec06g1972 Cco06g1976 Clacu06g1878 Cmu06g1820 Cre06g2635 . . Cone13ag0211 Cone19ag0200 . . . . . Blo15g00215 . . Bpe07g00883 . . . . Cmo10g00069 . . . . . . . . . . . . . . . . . . . . . Lsi06g01631 Csa01g00068 Chy02g02652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003680 2 1 2 1 2 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 1 1 1 3 3 1 1 3 3 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00736 Bda_Chr06 FPKM 11.960304 12.300528 18.366114 21.701666 7.332968 6.304615 8.738802 20.146858 19.95252