Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00738 ATGGCCCCAACTGTTCCTATAGAGTTCACTGGCCAGAAGGAATCAAGAAAGTACTCTCTTTCGCAGACAATGGGTAAATCTAGGAAATATTCCAAAGGGCTTTCATCCGGCTTTGTCTCAGATTCCCGTCATGTTGTAGAGACTATTGATGAATCAGATGGTTTTGGAAGTTCAGCGCAGGTTGAAGATGAGGCAATTGCTATAGAAAATTCACGTGCTCCTAAAAGGAAGTGTATTAGTTTGAATGGTTGTGATAACTTTGGTGTTGCTTTACAAGTTTTGTCTGTGTCAAAAATGACTCCTTCTGAAAGGAAGGATTTGGAATTGAAGTTGAAGATGGAACTTGAGCAGGTTCGGGCAATCCAAAAGAAAATTTCTAGTGTTGGCGCTTTGTCCACATCTAGTTATACTAAGAGCTATAACGTTGGACAGAGAGGAGCCTCTTTTGAGAATTTCAATAGGCCGCCCCAAGTCTCAGCTTCTACGGCTTCTAAAGGTAAGAAACGTCCAAACGGGACTCAAGCCAAAAAAAACAATTTTGGACCAGCCAAACCTGCAGCTGCAGTGAGTACGTCAAATGCTGCATTAGTCAAGCAGTGTGAAACACTATTGAATCGTTTAATGTCTCATCAGTATGCCTGGATTTTCAACTCGCCGGTCGACTCTGTGAAGTTGAACATTCCTGATTATTTCACTGTCATAAAGCATCCAATGGACTTGGGAACAGTGAAGAGCAACATGGTTATGGACAAATATAGAGATTTAATGGATTTCGCTGCGGATGTGCGGCTTACTTTTTCAAATGCAATGACTTATAATCCTCCAGAAAATGATGTTCATTTCATGGCAAGTTCACTTAGTAAATATTTTGAAGTGAGATGGAAAGGTATAGAGAAGAAGCTTCCATTACCCATTACCGTGCCTTCAAGAGTTCAAATGGACACTGAAGCTTCTTTGAGTGTACCACTTTCAACTAATGAGCAAGTTACTACAGATGACTTTTATGGTCAATCGGATATTAATAGGAAACCAATGACTGATGAAGAAAAGCACAAGTTTAGTTTGGAGTTGGAGTCTTTATCTACAGACTTGCCTCAAAGCATAATTACATTCCTGAAGGAGCACAGCTCTAGTTCAGGTCAAAACAGCGAGGATGAGATTGAAATTGACATTTATGCACTCAGTGATGATACGTTGTTCACTCTGAGGAAGCTTTTGGATGATTGTTTATTAAAGCAAAAAACCCAAGTGAAGGCTGAATCTCTTGATTTGGAGCGTCAGAATGAATCAGGGATTCACAATTCATCCATAGATGCCTGTAAAGGAAATGACCCAATTGACGAGGATGTGGATATCGTTGGTGGAAATGATCAACCAGTGTCTACCTATCTTCCATCGGAAATACATAATGATGTTGTTTGTCGTCGTACCAAAGGCAATAGCTCATGCACTTCAAGTGGGGACTCGGGGTCTTCATCAAGTGATTCTGGCTCAGGCGGTTCATCTGAACGCGAATCAGAAGATGCCAATGCCGTAGGTCCTAGCAGCATCACAAAGGAAATCATTGGTGACAAAACTATTTCAGATAATCAAAGAGTTCAGTTGGGTGATTCAGAAAATCCCACTTATTCAGAAAATGAGGTTGGTATAATTGAGCCCAATTTTCAGCAAGAATCTGTTTCTTTAAAGACAGATACTCAACAAGAGGTGGATAGTGCTCCATCTGAGAGGCAAGTCTCGCCTGAAAAACTATACCGTGCAGCACTATTGAGGAATCGTTTTGCTGATACCATACTTAAGGCTCGAGAAAAAGCATTTGAAAAGGGTGACAAACTCGACCCAGAAAAACTTCGAATAGAGAGAGACGAACTTGAAAGGAGGCAAAAAGAAGAAAAGGCTAGACTCCAAGCGGAAGCGAAGGCTGCAGAAGAGGCAAGAAGAAAAGCTGCTCGAGAAGCCGCGGCTGAAGCTAAAAGGAAGAGGGAGCTAGAGAGAGAAGCTGCACGTCAGGCATTGTTAAAGATGGAAAAGACTGTTGAAATCAATGGGAATAGTCTGTTTATGGAAGATCTGGAACTCCTCAGGGTTTCTCACGAGGAAGATTTACCAACTTCTGGAGAGCAGACGAGCCCAGATCATTTATCGAGTGGGTTGGGTAGTTTTAAGCTACAAGGGAGCAGTAACCCCTTGGAACAGCTCGGCTTGTACATGAAAAAGGAGGATGGCGATTTTGACGATGACGAAGTGGAAGAAGAACCCCAGGGTTCTGAACCGGTAAATGACGTGGAGGAAGGGGAAATTGATTAA 2307 42.0 MAPTVPIEFTGQKESRKYSLSQTMGKSRKYSKGLSSGFVSDSRHVVETIDESDGFGSSAQVEDEAIAIENSRAPKRKCISLNGCDNFGVALQVLSVSKMTPSERKDLELKLKMELEQVRAIQKKISSVGALSTSSYTKSYNVGQRGASFENFNRPPQVSASTASKGKKRPNGTQAKKNNFGPAKPAAAVSTSNAALVKQCETLLNRLMSHQYAWIFNSPVDSVKLNIPDYFTVIKHPMDLGTVKSNMVMDKYRDLMDFAADVRLTFSNAMTYNPPENDVHFMASSLSKYFEVRWKGIEKKLPLPITVPSRVQMDTEASLSVPLSTNEQVTTDDFYGQSDINRKPMTDEEKHKFSLELESLSTDLPQSIITFLKEHSSSSGQNSEDEIEIDIYALSDDTLFTLRKLLDDCLLKQKTQVKAESLDLERQNESGIHNSSIDACKGNDPIDEDVDIVGGNDQPVSTYLPSEIHNDVVCRRTKGNSSCTSSGDSGSSSSDSGSGGSSERESEDANAVGPSSITKEIIGDKTISDNQRVQLGDSENPTYSENEVGIIEPNFQQESVSLKTDTQQEVDSAPSERQVSPEKLYRAALLRNRFADTILKAREKAFEKGDKLDPEKLRIERDELERRQKEEKARLQAEAKAAEEARRKAAREAAAEAKRKRELEREAARQALLKMEKTVEINGNSLFMEDLELLRVSHEEDLPTSGEQTSPDHLSSGLGSFKLQGSSNPLEQLGLYMKKEDGDFDDDEVEEEPQGSEPVNDVEEGEID 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10032733 10036998 + Bda024043.1 Bda06g00738 8320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00738 768 SUPERFAMILY Bromodomain 191 303 IPR036427 GO:0005515
Bda06g00738 768 Gene3D - 176 302 IPR036427 GO:0005515
Bda06g00738 768 MobiDBLite consensus disorder prediction 743 768 - -
Bda06g00738 768 ProSiteProfiles NET domain profile. 335 417 IPR027353 -
Bda06g00738 768 MobiDBLite consensus disorder prediction 147 185 - -
Bda06g00738 768 PANTHER TRANSCRIPTION FACTOR GTE10 25 754 - -
Bda06g00738 768 ProSiteProfiles Bromodomain profile. 208 280 IPR001487 GO:0005515
Bda06g00738 768 MobiDBLite consensus disorder prediction 147 178 - -
Bda06g00738 768 MobiDBLite consensus disorder prediction 1 24 - -
Bda06g00738 768 SMART bromo_6 189 299 IPR001487 GO:0005515
Bda06g00738 768 MobiDBLite consensus disorder prediction 521 545 - -
Bda06g00738 768 Coils Coil 104 124 - -
Bda06g00738 768 Pfam Bromodomain 200 283 IPR001487 GO:0005515
Bda06g00738 768 MobiDBLite consensus disorder prediction 478 513 - -
Bda06g00738 768 MobiDBLite consensus disorder prediction 478 545 - -
Bda06g00738 768 Pfam Bromodomain extra-terminal - transcription regulation 344 407 IPR027353 -
Bda06g00738 768 Coils Coil 621 667 - -
Bda06g00738 768 MobiDBLite consensus disorder prediction 698 768 - -
Bda06g00738 768 PANTHER TRANSCRIPTION FACTOR GTE8 25 754 - -
Bda06g00738 768 MobiDBLite consensus disorder prediction 620 664 - -
Bda06g00738 768 CDD Bromo_plant1 198 294 IPR037377 -
Bda06g00738 768 MobiDBLite consensus disorder prediction 707 731 - -
Bda06g00738 768 Gene3D - 338 416 IPR038336 -
Bda06g00738 768 PRINTS Bromodomain signature 211 224 IPR001487 GO:0005515
Bda06g00738 768 PRINTS Bromodomain signature 261 280 IPR001487 GO:0005515
Bda06g00738 768 PRINTS Bromodomain signature 227 243 IPR001487 GO:0005515
Bda06g00738 768 PRINTS Bromodomain signature 243 261 IPR001487 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00738 - - - cit:102625809 743.036
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00738 Bda-Chr6:10032733 Bda15g00665 Bda-Chr15:10133880 0 dispersed
Bda06g00738 Bda-Chr6:10032733 Bda06g01139 Bda-Chr6:40344701 9.06E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g154 . . Bda06g00738 . . . . Bma12g01074 . . . Cma11g00049 Car10g00063 Car11g00042 . . Cpe04g01603 Bhi02g00543 . . . Hepe09g0065 . . Cla06g01728 Cam06g1918 Cec06g1968 Cco06g1972 Clacu06g1874 Cmu06g1816 Cre06g2631 . . Cone13ag0209 Cone19ag0196 . . . . . . . . Bpe07g00881 . . . . Cmo10g00071 Cmo11g00050 . . . . . . . . . . . . . . . . . . . . Lsi06g01625 Csa01g00073 Chy02g02647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00738 Bda_Chr06 FPKM 5.719152 6.757473 3.311204 4.111632 15.68065 14.62334 15.834791 2.730818 3.220981